?|?|CLOCUS PFDCG 6408 bp ss-DNA circular PHG 28-APR-2004 DEFINITION Enterobacteria phage fd strain 478, complete genome. ACCESSION J02451 M10731 M10767 M21666 M21667 M21668 M21669 M21670 M25198 V00602 VERSION J02451.1 GI:215394 KEYWORDS . SOURCE Enterobacteria phage fd ORGANISM Enterobacteria phage fd Viruses; ssDNA viruses; Inoviridae; Inovirus. REFERENCE 1 (sites) AUTHORS Sugimoto,K., Sugisaki,H., Okamoto,T. and Takanami,M. TITLE Studies on bacteriophage fd DNA. III. Nucleotide sequence preceding the RNA start-site on a promoter-containing fragment JOURNAL Nucleic Acids Res. 2 (11), 2091-2100 (1975) PUBMED 1052531 REFERENCE 2 (bases 402 to 443) AUTHORS Schaller,H., Gray,C. and Herrmann,K. TITLE Nucleotide sequence of an RNA polymerase binding site from the DNA of bacteriophage fd JOURNAL Proc. Natl. Acad. Sci. U.S.A. 72 (2), 737-741 (1975) PUBMED 1054851 REFERENCE 3 (bases 1196 to 1564) AUTHORS Sugimoto,K., Sugisaki,H., Okamoto,T. and Takanami,M. TITLE Studies on bacteriophage fd DNA: IV The sequence of messenger RNA for the major coat protein gene JOURNAL J. Mol. Biol. 110, 487-507 (1977) REFERENCE 4 (bases 1 to 6408) AUTHORS Beck,E., Sommer,R., Auerswald,E.A., Kurz,C., Zink,B., Osterburg,G., Schaller,H., Sugimoto,K., Sugisaki,H., Okamoto,T. and Takanami,M. TITLE Nucleotide sequence of bacteriophage fd DNA JOURNAL Nucleic Acids Res. 5 (12), 4495-4503 (1978) PUBMED 745987 REFERENCE 5 (bases 5585 to 5771) AUTHORS Gray,C.P., Sommer,R., Polke,C., Beck,E. and Schaller,H. TITLE Structure of the orgin of DNA replication of bacteriophage fd JOURNAL Proc. Natl. Acad. Sci. U.S.A. 75 (1), 50-53 (1978) PUBMED 272666 REFERENCE 6 (sites) AUTHORS Horabin,J.I. and Webster,R.E. TITLE An amino acid sequence which directs membrane insertion causes loss of membrane potential JOURNAL J. Biol. Chem. 263 (23), 11575-11583 (1988) PUBMED 2457024 COMMENT On Apr 28, 2004 this sequence version replaced gi:14931. [6] sites; internal signal sequence. [1] sites. Single-stranded circular DNA which codes for ten proteins replicative form is duplex. Filamentous. [3] missing data project. FEATURES Location/Qualifiers source 1..6408 /organism="Enterobacteria phage fd" /mol_type="genomic DNA" /strain="478" /db_xref="taxon:10864" CDS join(6007..6408,1..831) /note="rf replication; nicking" /codon_start=1 /transl_table=11 /product="II" /protein_id="AAA32303.1" /db_xref="GI:215395" /translation="MIDMLVLRLPFIDSLVCSRLSGNDLIAFVDLSKIATLSGMNLSA RTVEYHIDGDLTVSGLSHPFESLPTHYSGIAFKIYEGSKNFYPCVEIKASPAKVLQGH NVFGTTDLALCSEALLLNFANSLPCLYDLLDVNATTISRIDATFSARAPNENIAKQVI DHLRNVSNGQTKSTRSQNWESTVTWNETSRHRTLVAYLKHVELQHQIQQLSSKPSAKM TSYQKEQLKVLSNPDLLEFASGLVRFEARIETRYLKSFGLPLNLFDAIRFASDYNRQG KDLIFDLWSFSFSELFKAFEGDSMNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYF GFYRRLVNEGYDSVALTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINV DFSSQRPDWYNEPVLKIA" CDS 496..831 /codon_start=1 /transl_table=11 /product="X" /protein_id="AAA32304.1" /db_xref="GI:215396" /translation="MNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNE GYDSVALTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRPDW YNEPVLKIA" CDS 843..1106 /note="single-stranded binding protein" /codon_start=1 /transl_table=11 /product="V" /protein_id="AAA32305.1" /db_xref="GI:215397" /translation="MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVL VKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK" CDS 1108..1209 /function="morphogenesis" /codon_start=1 /transl_table=11 /product="VII" /protein_id="AAA32306.1" /db_xref="GI:215398" /translation="MEQVADFDTIYQAMIQISVVLCFALGIIAGGQR" CDS 1206..1304 /note="minor coat protein" /codon_start=1 /transl_table=11 /product="IX" /protein_id="AAA32307.1" /db_xref="GI:215399" /translation="MSVLVYSFASFVLGWCLRSGITYFTRLMETSS" CDS 1301..1522 /note="major coat protein" /codon_start=1 /transl_table=11 /product="VIII" /protein_id="AAA32308.1" /db_xref="GI:215400" /translation="MKKSLVLKASVAVATLVPMLSFAAEGDDPAKAAFDSLQASATEY IGYAWAMVVVIVGATIGIKLFKKFTSKAS" CDS 1579..2853 /note="adsorption protein" /codon_start=1 /transl_table=11 /product="III" /protein_id="AAA32309.1" /db_xref="GI:215401" /translation="MKKLLFAIPLVVPFYSHSAETVESCLAKPHTENSFTNVWKDDKT LDRYANYEGCLWNATGVVVCTGDETQCYGTWVPIGLAIPENEGGGSEGGGSEGGGSEG GGTKPPEYGDTPIPGYTYINPLDGTYPPGTEQNPANPNPSLEESQPLNTFMFQNNRFR NRQGALTVYTGTVTQGTDPVKTYYQYTPVSSKAMYDAYWNGKFRDCAFHSGFNEDPFV CEYQGQSSDLPQPPVNAGGGSGGGSGGGSEGGGSEGGGSEGGGSEGGGSGGGSGSGDF DYEKMANANKGAMTENADENALQSDAKGKLDSVATDYGAAIDGFIGDVSGLANGNGAT GDFAGSNSQMAQVGDGDNSPLMNNFRQYLPSLPQSVECRPYVFGAGKPYEFSIDCDKI NLFRGVFAFLLYVATFMYVFSTFANILRNKES" CDS 2856..3194 /function="morphogenesis" /codon_start=1 /transl_table=11 /product="VI" /protein_id="AAA32310.1" /db_xref="GI:215402" /translation="MPVLLGIPLLLRFLGFLLVTLFGYLLTFLKKGFGKIAIAISLFL ALIIGLNSILVGYLSDISAQLPSDFVQGVQLILPSNALPCFYVILSVKAAIFIFDVKQ KIVSYLDWDK" CDS 3197..4243 /function="morphogenesis" /codon_start=1 /transl_table=11 /product="I" /protein_id="AAA32311.1" /db_xref="GI:215403" /translation="MAVYFVTGKLGSGKTLVSVGKIQDKIVAGCKIATNLDLRLQNLP QVGRFAKTPRVLRIPDKPSISDLLAIGRGNDSYDENKNGLLVLDECGTWFNTRSWNDK ERQPIIDWFLHARKLGWDIIFLVQDLSIVDKQARSALAEHVVYCRRLDRITLPFVGTL YSLVTGSKMPLPKLHVGVVKYGDSQLSPTVERWLYTGKNLYNAYDTKQAFSSNYDSGV YSYLTPYLSHGRYFKPLNLGQKMKLTKIYLKKFSRVLCLAIGFASAFTYSYITQPKPE VKKVVSQTYDFDKFTIDSSQRLNLSYRYVFKDSKGKLINSDDLQKQGYSITYIDLCTV SIKKGNSNEIVKCN" misc_feature 3817..4081 /note="internal signal sequence for gene I product [6]" CDS 4221..5501 /function="morphogenesis" /codon_start=1 /transl_table=11 /product="IV" /protein_id="AAA32312.1" /db_xref="GI:215404" /translation="MKLLNVINFVFLMFVSSSSFAQVIEMNNSPLRDFVTWYSKQTGE SVIVSPDVKGTVTVYSSDVKPENLRNFFISVLRANNFDMVGSIPSIIQKYNPNSQDYI DELPSSDIQEYDDNSAPSGGFFVPQNDNVTQTFKINNVRAKDLIRVVELFVKSNTSKS SNVLSVDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDALDFSFA AGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLGLSVRALKTNSHSKILSVPRIL TLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIV LDITSKADSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFL SKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL" rep_origin 5782 /note="origin of viral strand synthesis" ORIGIN 1 aacgctacta ccattagtag aattgatgcc accttttcag ctcgcgcccc aaatgaaaat 61 atagctaaac aggttattga ccatttgcga aatgtatcta atggtcaaac taaatctact 121 cgttcgcaga attgggaatc aactgttaca tggaatgaaa cttccagaca ccgtacttta 181 gttgcatatt taaaacatgt tgaactacag caccagattc agcaattaag ctctaagcca 241 tccgcaaaaa tgacctctta tcaaaaggag caattaaagg tactgtctaa tcctgacctg 301 ttggaatttg cttccggtct ggttcgcttt gaggctcgaa ttgaaacgcg atatttgaag 361 tctttcgggc ttcctcttaa tctttttgat gcaattcgct ttgcttctga ctataataga 421 cagggtaaag acctgatttt tgatttatgg tcattctcgt tttctgaact gtttaaagca 481 tttgaggggg attcaatgaa tatttatgac gattccgcag tattggacgc tatccagtct 541 aaacatttta caattacccc ctctggcaaa acttcctttg caaaagcctc tcgctatttt 601 ggtttctatc gtcgtctggt taatgagggt tatgatagtg ttgctcttac catgcctcgt 661 aattcctttt ggcgttatgt atctgcatta gttgagtgtg gtattcctaa atctcaattg 721 atgaatcttt ccacctgtaa taatgttgtt ccgttagttc gttttattaa cgtagatttt 781 tcctcccaac gtcctgactg gtataatgag ccagttctta aaatcgcata aggtaattca 841 aaatgattaa agttgaaatt aaaccgtctc aagcgcaatt tactacccgt tctggtgttt 901 ctcgtcaggg caagccttat tcactgaatg agcagctttg ttacgttgat ttgggtaatg 961 aatatccggt gcttgtcaag attactctcg acgaaggtca gccagcgtat gcgcctggtc 1021 tgtacaccgt gcatctgtcc tcgttcaaag ttggtcagtt cggttctctt atgattgacc 1081 gtctgcgcct cgttccggct aagtaacatg gagcaggtcg cggatttcga cacaatttat 1141 caggcgatga tacaaatctc cgttgtactt tgtttcgcgc ttggtataat cgctgggggt 1201 caaagatgag tgttttagtg tattctttcg cctctttcgt tttaggttgg tgccttcgta 1261 gtggcattac gtattttacc cgtttaatgg aaacttcctc atgaaaaagt ctttagtcct 1321 caaagcctcc gtagccgttg ctaccctcgt tccgatgctg tctttcgctg ctgagggtga 1381 cgatcccgca aaagcggcct ttgactccct gcaagcctca gcgaccgaat atatcggtta 1441 tgcgtgggcg atggttgttg tcattgtcgg cgcaactatc ggtatcaagc tgtttaagaa 1501 attcacctcg aaagcaagct gataaaccga tacaattaaa ggctcctttt ggagcctttt 1561 tttttggaga ttttcaacgt gaaaaaatta ttattcgcaa ttcctttagt tgttcctttc 1621 tattctcact ccgctgaaac tgttgaaagt tgtttagcaa aacctcatac agaaaattca 1681 tttactaacg tctggaaaga cgacaaaact ttagatcgtt acgctaacta tgagggctgt 1741 ctgtggaatg ctacaggcgt tgtggtttgt actggtgacg aaactcagtg ttacggtaca 1801 tgggttccta ttgggcttgc tatccctgaa aatgagggtg gtggctctga gggtggcggt 1861 tctgagggtg gcggttctga gggtggcggt actaaacctc ctgagtacgg tgatacacct 1921 attccgggct atacttatat caaccctctc gacggcactt atccgcctgg tactgagcaa 1981 aaccccgcta atcctaatcc ttctcttgag gagtctcagc ctcttaatac tttcatgttt 2041 cagaataata ggttccgaaa taggcagggt gcattaactg tttatacggg cactgttact 2101 caaggcactg accccgttaa aacttattac cagtacactc ctgtatcatc aaaagccatg 2161 tatgacgctt actggaacgg taaattcaga gactgcgctt tccattctgg ctttaatgag 2221 gatccattcg tttgtgaata tcaaggccaa tcgtctgacc tgcctcaacc tcctgtcaat 2281 gctggcggcg gctctggtgg tggttctggt ggcggctctg agggtggcgg ctctgagggt 2341 ggcggttctg agggtggcgg ctctgagggt ggcggttccg gtggcggctc cggttccggt 2401 gattttgatt atgaaaaaat ggcaaacgct aataaggggg ctatgaccga aaatgccgat 2461 gaaaacgcgc tacagtctga cgctaaaggc aaacttgatt ctgtcgctac tgattacggt 2521 gctgctatcg atggtttcat tggtgacgtt tccggccttg ctaatggtaa tggtgctact 2581 ggtgattttg ctggctctaa ttcccaaatg gctcaagtcg gtgacggtga taattcacct 2641 ttaatgaata atttccgtca atatttacct tctttgcctc agtcggttga atgtcgccct 2701 tatgtctttg gcgctggtaa accatatgaa ttttctattg attgtgacaa aataaactta 2761 ttccgtggtg tctttgcgtt tcttttatat gttgccacct ttatgtatgt attttcgacg 2821 tttgctaaca tactgcgtaa taaggagtct taatcatgcc agttcttttg ggtattccgt 2881 tattattgcg tttcctcggt ttccttctgg taactttgtt cggctatctg cttactttcc 2941 ttaaaaaggg cttcggtaag atagctattg ctatttcatt gtttcttgct cttattattg 3001 ggcttaactc aattcttgtg ggttatctct ctgatattag cgcacaatta ccctctgatt 3061 ttgttcaggg cgttcagtta attctcccgt ctaatgcgct tccctgtttt tatgttattc 3121 tctctgtaaa ggctgctatt ttcatttttg acgttaaaca aaaaatcgtt tcttatttgg 3181 attgggataa ataaatatgg ctgtttattt tgtaactggc aaattaggct ctggaaagac 3241 gctcgttagc gttggtaaga ttcaggataa aattgtagct gggtgcaaaa tagcaactaa 3301 tcttgattta aggcttcaaa acctcccgca agtcgggagg ttcgctaaaa cgcctcgcgt 3361 tcttagaata ccggataagc cttctatttc tgatttgctt gctattggtc gtggtaatga 3421 ttcctacgac gaaaataaaa acggtttgct tgttcttgat gaatgcggta cttggtttaa 3481 tacccgttca tggaatgaca aggaaagaca gccgattatt gattggtttc ttcatgctcg 3541 taaattggga tgggatatta tttttcttgt tcaggattta tctattgttg ataaacaggc 3601 gcgttctgca ttagctgaac acgttgttta ttgtcgccgt ctggacagaa ttactttacc 3661 ctttgtcggc actttatatt ctcttgttac tggctcaaaa atgcctctgc ctaaattaca 3721 tgttggtgtt gttaaatatg gtgattctca attaagccct actgttgagc gttggcttta 3781 tactggtaag aatttatata acgcatatga cactaaacag gctttttcca gtaattatga 3841 ttcaggtgtt tattcatatt taacccctta tttatcacac ggtcggtatt tcaaaccatt 3901 aaatttaggt cagaagatga aattaactaa aatatatttg aaaaagtttt ctcgcgttct 3961 ttgtcttgcg ataggatttg catcagcatt tacatatagt tatataaccc aacctaagcc 4021 ggaggttaaa aaggtagtct ctcagaccta tgattttgat aaattcacta ttgactcttc 4081 tcagcgtctt aatctaagct atcgctatgt tttcaaggat tctaagggaa aattaattaa 4141 tagcgacgat ttacagaagc aaggttattc catcacatat attgatttat gtactgtttc 4201 aattaaaaaa ggtaattcaa atgaaattgt taaatgtaat taattttgtt ttcttgatgt 4261 ttgtttcatc atcttctttt gctcaagtaa ttgaaatgaa taattcgcct ctgcgcgatt 4321 tcgtgacttg gtattcaaag caaacaggtg aatctgttat tgtctcacct gatgttaaag 4381 gtacagtgac tgtatattcc tctgacgtta agcctgaaaa tttacgcaat ttctttatct 4441 ctgttttacg tgctaataat tttgatatgg ttggctcaat tccttccata attcagaaat 4501 ataacccaaa tagtcaggat tatattgatg aattgccatc atctgatatt caggaatatg 4561 atgataattc cgctccttct ggtggtttct ttgttccgca aaatgataat gttactcaaa 4621 catttaaaat taataacgtt cgcgcaaagg atttaataag ggttgtagaa ttgtttgtta 4681 aatctaatac atctaaatcc tcaaatgtat tatctgttga tggttctaac ttattagtag 4741 ttagcgcccc taaagatatt ttagataacc ttccgcaatt tctttctact gttgatttgc 4801 caactgacca gatattgatt gaaggattaa ttttcgaggt tcagcaaggt gatgctttag 4861 atttttcctt tgctgctggc tctcagcgcg gcactgttgc tggtggtgtt aatactgacc 4921 gtctaacctc tgttttatct tctgcgggtg gttcgttcgg tatttttaac ggcgatgttt 4981 tagggctatc agttcgcgca ttaaagacta atagccattc aaaaatattg tctgtgcctc 5041 gtattcttac gctttcaggt cagaagggtt ctatttctgt tggccagaat gtccctttta 5101 ttactggtcg tgtaactggt gaatctgcca atgtaaataa tccatttcag acggttgagc 5161 gtcaaaatgt tggtatttct atgagtgttt ttcccgttgc aatggctggc ggtaatattg 5221 ttttagatat aaccagtaag gccgatagtt tgagttcttc tactcaggca agtgatgtta 5281 ttactaatca aagaagtatt gcgacaacgg ttaatttgcg tgatggtcag actcttttgc 5341 tcggtggcct cactgattac aaaaacactt ctcaagattc tggtgtgccg ttcctgtcta 5401 aaatcccttt aatcggcctc ctgtttagct cccgttctga ttctaacgag gaaagcacgt 5461 tgtacgtgct cgtcaaagca accatagtac gcgccctgta gcggcgcatt aagcgcggcg 5521 ggtgtggtgg ttacgcgcag cgtgaccgct acacttgcca gcgccctagc gcccgctcct 5581 ttcgctttct tcccttcctt tctcgccacg ttctccggct ttccccgtca agctctaaat 5641 cgggggatcc ctttagggtt ccgatttagt gctttacggc acctcgacct ccaaaaactt 5701 gatttgggtg atggttcacg tagtgggcca tcgccctgat agacggtttt tcgccctttg 5761 acgttggagt ccacgttctt taatagtgga ctcttgttcc aaactggaac aacactcaca 5821 actaactcgg cctattcttt tgatttataa ggatttttgt cattttctgc ttactggtta 5881 aaaaataagc tgatttaaca aatatttaac gcgaaattta acaaaacatt aacgtttaca 5941 atttaaatat ttgcttatac aatcatcctg tttttggggc ttttctgatt atcaaccggg 6001 gtacatatga ttgacatgct agttttacga ttaccgttca tcgattctct tgtttgctcc 6061 agactttcag gtaatgacct gatagccttt gtagacctct caaaaatagc taccctctcc 6121 ggcatgaatt tatcagctag aacggttgaa tatcatattg acggtgattt gactgtctcc 6181 ggcctttctc acccgtttga atctttgcct actcattact ccggcattgc atttaaaata 6241 tatgagggtt ctaaaaattt ttatccctgc gttgaaatta aggcttcacc agcaaaagta 6301 ttacagggtc ataatgtttt tggtacaacc gatttagctt tatgctctga ggctttattg 6361 cttaattttg ctaactctct gccttgcttg tacgatttat tggatgtt //Bacteriophage fd strain 478 "Times New Roman?|C! fd_terminator"Times New Roman?|CɆw? Orf frame 1"Times New Roman?|C, fd_terminator"Times New Roman?|CɆ%  Orf frame 1"Times New Roman?|}  Orf frame 2"Times New Roman?|C}} Orf frame 3"Times New Roman?|C f1_origin"Times New Roman ?|MscI"Times New Roman =