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  • BVTech Plasmid

    This sequnce graph is created using BVTech Plasmid, which is DNA sequence analysis and plasmid drawing software for Windows PCs.You can use it to plan your DNA cloning, draw high quality plasmid maps, analyse your DNA sequencing data, align sequences, and much more.

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    Sequence of HaloTag

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    Sequence of HaloTag pHT2 : 4924 BP; 1199 A; 1241 C; 1216 G; 1268 T; 0 other;

    ............................................................
    1tcaatattggccattagccatattattcattggttatatagcataaatcaatattggcta60
    1agttataaccggtaatcggtataataagtaaccaatatatcgtatttagttataaccgat60
    ............................................................
    ............................................................
    61ttggccattgcatacgttgtatctatatcataatatgtacatttatattggctcatgtcc120
    61aaccggtaacgtatgcaacatagatatagtattatacatgtaaatataaccgagtacagg120
    ............................................................
    .............................. SpeI(152)....................
    121aatatgaccgccatgttggcattgattattgactagttattaatagtaatcaattacggg180
    121ttatactggcggtacaaccgtaactaataactgatcaataattatcattagttaatgccc180
    ................................................. CMV_imm_pro
    ............................................................
    181gtcattagttcatagcccatatatggagttccgcgttacataacttacggta aatggccc240
    181cagtaatcaagtatcgggtatatacctcaaggcgcaatgtattgaatgccatttaccggg240
    ................... CMV_imm_pro......... CAG_en..........
    ............................................................
    241gcctggctgaccgcccaacgacccccgcccattgacgtcaataatgacgt atgttcccat300
    241cggaccgactggcgggttgctgggggcgggtaactgcagttattactgcatacaagggta300
    ................ CAG_en CMV_imm_pro..........................
    ............................................................
    301agtaacgccaatagggactttccattgacgtcaatgggtggagtatttac ggtaaactgc360
    301tcattgcggttatccctgaaaggtaactgcagttacccacctcataaatgccatttgacg360
    ................ CAG_en CMV_imm_pro..........................
    ............................................................
    361ccacttggcagtacatcaagtgtatcatatgccaagtccgccccctattg acgtcaatga420
    361ggtgaaccgtcatgtagttcacatagtatacggttcaggcgggggataactgcagttact420
    ................ CAG_en CMV_imm_pro..........................
    ............................................................
    421cggtaaatggcccgcctggcattatgcccagtacatgaccttacgggact ttcctacttg480
    421gccatttaccgggcggaccgtaatacgggtcatgtactggaatgccctgaaaggatgaac480
    ................ CAG_en CMV_imm_pro..........................
    ............................................................
    481gcagtacatctacgtattagtcatcgctattaccatggtgatgcggttttggcagtacac540
    481cgtcatgtagatgcataatcagtagcgataatggtaccactacgccaaaaccgtcatgtg540
    ......... CAG_en CMV_imm_pro.............................
    ............................................................
    541caatgggcgtggatagcggtttgactcacggggatttccaagtctccaccccattgacgt600
    541gttacccgcacctatcgccaaactgagtgcccctaaaggttcagaggtggggtaactgca600
    ................... CMV_imm_pro.............................
    ............................................................
    601caatgggagtttgttttggcaccaaaatcaacgggactttccaaaatgtcgtaataaccc660
    601gttaccctcaaacaaaaccgtggttttagttgccctgaaaggttttacagcattattggg660
    ................... CMV_imm_pro.............................
    ............................................................
    661cgccccgttgacgcaaatgggcggtaggcgtgtacggtgggaggtctatataagcagagc720
    661gcggggcaactgcgtttacccgccatccgcacatgccaccctccagatatattcgtctcg720
    .......... CMV_imm_pro CMV_pro CMV_f_pri....................
    SacI(721)..................................................
    721tcgtttagtgaaccgtcagatcactagaagctttattgcggtagtttatcacagttaaat780
    721agcaaatcacttggcagtctagtgatcttcgaaataacgccatcaaatagtgtcaattta780
    pCEP_f_pri CMV_pro LNCX_primer..............................
    ........................................ PstI(830)..........
    781tgctaacgcagtcagtgcttctgacacaacagtctcgaacttaagctgcagaagttggtc840
    781acgattgcgtcagtcacgaagactgtgttgtcagagcttgaattcgacgtcttcaaccag840
    ............................................................
    ............................................................
    841gtgaggcactgggcaggtaagtatcaaggttacaagacaggtttaaggagaccaatagaa900
    841cactccgtgacccgtccattcatagttccaatgttctgtccaaattcctctggttatctt900
    .............................. chim_int....................
    ............................................................
    901actgggcttgtcgagacagagaagactcttgcgtttctgataggcacctattggtcttac960
    901tgacccgaacagctctgtctcttctgagaacgcaaagactatccgtggataaccagaatg960
    .................... chim_int..............................
    ............................................................
    961tgacatccactttgcctttctctccacaggtgtccactcccagttcaattacagctctta1020
    961actgtaggtgaaacggaaagagaggtgtccacaggtgagggtcaagttaatgtcgagaat1020
    .......... chim_int........................................
    ........................ NheI(1052) PvuII(1060)..............
    1021aggctagagtacttaatacgactcactataggctagccagctggcgcggatatcgccacc1080
    1021tccgatctcatgaattatgctgagtgatatccgatcggtcgaccgcgcctatagcggtgg1080
    .................... T7_pro..............................
    BamHI(1084)................................................
    1081atgggatccgaaatcggtacaggcttccccttcgacccccattatgtggaagtcctgggc1140
    1081taccctaggctttagccatgtccgaaggggaagctgggggtaatacaccttcaggacccg1140
    ................... Orf frame 1.............................
    ............................................................
    1141gagcgtatgcactacgtcgatgttggaccgcgggatggcacgcctgtgctgttcctgcac1200
    1141ctcgcatacgtgatgcagctacaacctggcgccctaccgtgcggacacgacaaggacgtg1200
    ................... Orf frame 1.............................
    ............................................................
    1201ggtaacccgacctcgtcctacctgtggcgcaacatcatcccgcatgtagcaccgagtcat1260
    1201ccattgggctggagcaggatggacaccgcgttgtagtagggcgtacatcgtggctcagta1260
    ................... Orf frame 1.............................
    ............................................................
    1261cggtgcattgctccagacctgatcgggatgggaaaatcggacaaaccagacctcgattat1320
    1261gccacgtaacgaggtctggactagccctacccttttagcctgtttggtctggagctaata1320
    ................... Orf frame 1.............................
    ............................................................
    1321ttcttcgacgaccacgtccgctacctcgatgccttcatcgaagccttgggtttggaagag1380
    1321aagaagctgctggtgcaggcgatggagctacggaagtagcttcggaacccaaaccttctc1380
    ................... Orf frame 1.............................
    ............................................................
    1381gtcgtcctggtcatccacgactggggctcagctctcggattccactgggccaagcgcaat1440
    1381cagcaggaccagtaggtgctgaccccgagtcgagagcctaaggtgacccggttcgcgtta1440
    ................... Orf frame 1.............................
    ............................................................
    1441ccggaacgggtcaaaggtattgcatgtatggaattcatccggcctatcccgacgtgggac1500
    1441ggccttgcccagtttccataacgtacataccttaagtaggccggatagggctgcaccctg1500
    ................... Orf frame 1.............................
    ............................................................
    1501gaatggccagaattcgcccgtgagaccttccaggccttccggaccgccgacgtcggccga1560
    1501cttaccggtcttaagcgggcactctggaaggtccggaaggcctggcggctgcagccggct1560
    ................... Orf frame 1.............................
    BclI(1565)..................................................
    1561gagttgatcatcgatcagaacgctttcatcgagggtgcgctcccgatgggggtcgtccgt1620
    1561ctcaactagtagctagtcttgcgaaagtagctcccacgcgagggctacccccagcaggca1620
    ................... Orf frame 1.............................
    .............................. NruI(1652)....................
    1621ccgcttacggaggtcgagatggaccactatcgcgagcccttcctcaagcctgttgaccga1680
    1621ggcgaatgcctccagctctacctggtgatagcgctcgggaaggagttcggacaactggct1680
    ................... Orf frame 1.............................
    ............................................................
    1681gagccactgtggcgattccccaacgagctgcccatcgccggtgagcccgcgaacatcgtc1740
    1681ctcggtgacaccgctaaggggttgctcgacgggtagcggccactcgggcgcttgtagcag1740
    ................... Orf frame 1.............................
    ............................................................
    1741gcgctcgtcgaggcatacatgaactggctgcaccagtcacctgtcccgaagttgttgttc1800
    1741cgcgagcagctccgtatgtacttgaccgacgtggtcagtggacagggcttcaacaacaag1800
    ................... Orf frame 1.............................
    ............................................................
    1801tggggcacacccggcgtactgatccccccggccgaagccgcgagacttgccgaaagcctc1860
    1801accccgtgtgggccgcatgactaggggggccggcttcggcgctctgaacggctttcggag1860
    ................... Orf frame 1.............................
    ............................................................
    1861cccaactgcaagacagtggacatcggcccgggattgttcttgctccaggaagacaacccg1920
    1861gggttgacgttctgtcacctgtagccgggccctaacaagaacgaggtccttctgttgggc1920
    ................... Orf frame 1.............................
    ............................................................
    1921gaccttatcggcagtgagatcgcgcgctggctccccgggctggccggctaatagttaatt1980
    1921ctggaatagccgtcactctagcgcgcgaccgaggggcccgaccggccgattatcaattaa1980
    ................... Orf frame 1.............................
    NotI(1988)..................................................
    1981aagtaggcggccgcttccctttagtgagggttaatgcttcgagcagacatgataagatac2040
    1981ttcatccgccggcgaagggaaatcactcccaattacgaagctcgtctgtactattctatg2040
    ................................................. SV40_PA_term
    ............................................................
    2041attgatgagtttggacaaaccacaactagaatgcagtgaaaaaaatgctttatttgtgaa2100
    2041taactactcaaacctgtttggtgttgatcttacgtcactttttttacgaaataaacactt2100
    ........ EBV_rev_pri SV40_PA_term............................
    .................................................. HpaI(2154)
    2101atttgtgatgctattgctttatttgtaaccattataagctgcaataaacaagttaacaac2160
    2101taaacactacgataacgaaataaacattggtaatattcgacgttatttgttcaattgttg2160
    ................... SV40_PA_term.............................
    ............................................................
    2161aacaattgcattcattttatgtttcaggttcagggggagatgtgggaggttttttaaagc2220
    2161ttgttaacgtaagtaaaatacaaagtccaagtccccctctacaccctccaaaaaatttcg2220
    ............................................................
    ............................................................
    2221aagtaaaacctctacaaatgtggtaaaatccgataaggatcgatccgggctggcgtaata2280
    2221ttcattttggagatgtttacaccattttaggctattcctagctaggcccgaccgcattat2280
    ............................................................
    ............................................................
    2281gcgaagaggcccgcaccgatcgcccttcccaacagttgcgcagcctgaatggcgaatgga2340
    2281cgcttctccgggcgtggctagcgggaagggttgtcaacgcgtcggacttaccgcttacct2340
    ............................................................
    ............................................................
    2341cgcgccctgtagcggcgcattaagcgcggcgggtgtggtggttacgcgcagcgtgaccgc2400
    2341gcgcgggacatcgccgcgtaattcgcgccgcccacaccaccaatgcgcgtcgcactggcg2400
    .............................. f1_origin....................
    ............................................................
    2401tacacttgccagcgccctagcgcccgctcctttcgctttcttcccttcctttctcgccac2460
    2401atgtgaacggtcgcgggatcgcgggcgaggaaagcgaaagaagggaaggaaagagcggtg2460
    .................... f1_origin..............................
    ............................................................
    2461gttcgcgggctttccccgtcaagctctaaatcgggggctccctttagggttccgatttag2520
    2461caagcgcccgaaaggggcagttcgagatttagcccccgagggaaatcccaaggctaaatc2520
    .................... f1_origin..............................
    ............................................................
    2521tgctttacggcacctcgaccccaaaaaacttgattagggtgatggttcacgtagtgggcc2580
    2521acgaaatgccgtggagctggggttttttgaactaatcccactaccaagtgcatcacccgg2580
    .................... f1_origin..............................
    ............................................................
    2581atcgccctgatagacggtttttcgccctttgacgttggagtccacgttctttaatagtgg2640
    2581tagcgggactatctgccaaaaagcgggaaactgcaacctcaggtgcaagaaattatcacc2640
    .................... f1_origin..............................
    ............................................................
    2641actcttgttccaaactggaacaacactcaaccctatctcggtctattcttttgatttata2700
    2641tgagaacaaggtttgaccttgttgtgagttgggatagagccagataagaaaactaaatat2700
    .......... f1_origin........................................
    ............................................................
    2701agggattttgccgatttcggcctattggttaaaaaatgagctgatttaacaaaaatttaa2760
    2701tccctaaaacggctaaagccggataaccaattttttactcgactaaattgtttttaaatt2760
    ............................................................
    ............................................................
    2761cgcgaattttaacaaaatattaacgcttacaatttcctgatgcggtattttctccttacg2820
    2761gcgcttaaaattgttttataattgcgaatgttaaaggactacgccataaaagaggaatgc2820
    ............................................................
    ............................................................
    2821catctgtgcggtatttcacaccgcatatggtgcactctcagtacaatctgctctgatgcc2880
    2821gtagacacgccataaagtgtggcgtataccacgtgagagtcatgttagacgagactacgg2880
    ............................................................
    ............................................................
    2881gcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgt2940
    2881cgtatcaattcggtcggggctgtgggcggttgtgggcgactgcgcgggactgcccgaaca2940
    ............................................................
    ............................................................
    2941ctgctcccggcatccgcttacagacaagctgtgaccgtctccgggagctgcatgtgtcag3000
    2941gacgagggccgtaggcgaatgtctgttcgacactggcagaggccctcgacgtacacagtc3000
    ...................................... pGEX_3_primer........
    ............................................................
    3001aggttttcaccgtcatcaccgaaacgcgcgagacgaaagggcctcgtgatacgcctattt3060
    3001tccaaaagtggcagtagtggctttgcgcgctctgctttcccggagcactatgcggataaa3060
    ............................................................
    ............................................................
    3061ttataggttaatgtcatgataataatggtttcttagacgtcaggtggcacttttcgggga3120
    3061aatatccaattacagtactattattaccaaagaatctgcagtccaccgtgaaaagcccct3120
    ............................................................
    ............................................................
    3121aatgtgcgcggaacccctatttgtttatttttctaaatacattcaaatatgtatccgctc3180
    3121ttacacgcgccttggggataaacaaataaaaagatttatgtaagtttatacataggcgag3180
    ................................................ AmpR_promoter
    ............................................................
    3181atgagacaataaccctgataaatgcttcaataatattgaaaaaggaagagtatgagtatt3240
    3181tactctgttattgggactatttacgaagttattataactttttccttctcatactcataa3240
    AmpR_promoter.............................. Orf frame 1 Ampicillin
    ............................................................
    3241caacatttccgtgtcgcccttattcccttttttgcggcattttgccttcctgtttttgct3300
    3241gttgtaaaggcacagcgggaataagggaaaaaacgccgtaaaacggaaggacaaaaacga3300
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3301cacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgcacgagtgggt3360
    3301gtgggtctttgcgaccactttcattttctacgacttctagtcaacccacgtgctcaccca3360
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3361tacatcgaactggatctcaacagcggtaagatccttgagagttttcgccccgaagaacgt3420
    3361atgtagcttgacctagagttgtcgccattctaggaactctcaaaagcggggcttcttgca3420
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3421tttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcccgtattgac3480
    3421aaaggttactactcgtgaaaatttcaagacgatacaccgcgccataatagggcataactg3480
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3481gccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttggttgagtac3540
    3481cggcccgttctcgttgagccagcggcgtatgtgataagagtcttactgaaccaactcatg3540
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3541tcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaattatgcagtgct3600
    3541agtggtcagtgtcttttcgtagaatgcctaccgtactgtcattctcttaatacgtcacga3600
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3601gccataaccatgagtgataacactgcggccaacttacttctgacaacgatcggaggaccg3660
    3601cggtattggtactcactattgtgacgccggttgaatgaagactgttgctagcctcctggc3660
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3661aaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgccttgatcgttgg3720
    3661ttcctcgattggcgaaaaaacgtgttgtaccccctagtacattgagcggaactagcaacc3720
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3721gaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatgcctgtagca3780
    3721cttggcctcgacttacttcggtatggtttgctgctcgcactgtggtgctacggacatcgt3780
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3781atggcaacaacgttgcgcaaactattaactggcgaactacttactctagcttcccggcaa3840
    3781taccgttgttgcaacgcgtttgataattgaccgcttgatgaatgagatcgaagggccgtt3840
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3841caattaatagactggatggaggcggataaagttgcaggaccacttctgcgctcggccctt3900
    3841gttaattatctgacctacctccgcctatttcaacgtcctggtgaagacgcgagccgggaa3900
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3901ccggctggctggtttattgctgataaatctggagccggtgagcgtgggtctcgcggtatc3960
    3901ggccgaccgaccaaataacgactatttagacctcggccactcgcacccagagcgccatag3960
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    3961attgcagcactggggccagatggtaagccctcccgtatcgtagttatctacacgacgggg4020
    3961taacgtcgtgaccccggtctaccattcgggagggcatagcatcaatagatgtgctgcccc4020
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    4021agtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgatt4080
    4021tcagtccgttgatacctacttgctttatctgtctagcgactctatccacggagtgactaa4080
    .............. Orf frame 1 Ampicillin........................
    ............................................................
    4081aagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaactt4140
    4081ttcgtaaccattgacagtctggttcaaatgagtatatatgaaatctaactaaattttgaa4140
    Orf frame 1 Ampicillin......................................
    ............................................................
    4141catttttaatttaaaaggatctaggtgaagatcctttttgataatctcatgaccaaaatc4200
    4141gtaaaaattaaattttcctagatccacttctaggaaaaactattagagtactggttttag4200
    ............................................................
    ............................................................
    4201ccttaacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatct4260
    4201ggaattgcactcaaaagcaaggtgactcgcagtctggggcatcttttctagtttcctaga4260
    ................................................ pBR322_origin
    ............................................................
    4261tcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgcta4320
    4261agaactctaggaaaaaaagacgcgcattagacgacgaacgtttgtttttttggtggcgat4320
    .................. pBR322_origin............................
    ............................................................
    4321ccagcggtggtttgtttgccggatcaagagctaccaactctttttccgaaggtaactggc4380
    4321ggtcgccaccaaacaaacggcctagttctcgatggttgagaaaaaggcttccattgaccg4380
    .................. pBR322_origin............................
    ............................................................
    4381ttcagcagagcgcagataccaaatactgttcttctagtgtagccgtagttaggccaccac4440
    4381aagtcgtctcgcgtctatggtttatgacaagaagatcacatcggcatcaatccggtggtg4440
    .................. pBR322_origin............................
    ............................................................
    4441ttcaagaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccagtggct4500
    4441aagttcttgagacatcgtggcggatgtatggagcgagacgattaggacaatggtcaccga4500
    .................. pBR322_origin............................
    ............................................................
    4501gctgccagtggcgataagtcgtgtcttaccgggttggactcaagacgatagttaccggat4560
    4501cgacggtcaccgctattcagcacagaatggcccaacctgagttctgctatcaatggccta4560
    .................. pBR322_origin............................
    ............................................................
    4561aaggcgcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacg4620
    4561ttccgcgtcgccagcccgacttgccccccaagcacgtgtgtcgggtcgaacctcgcttgc4620
    .................. pBR322_origin............................
    ............................................................
    4621acctacaccgaactgagatacctacagcgtgagctatgagaaagcgccacgcttcccgaa4680
    4621tggatgtggcttgactctatggatgtcgcactcgatactctttcgcggtgcgaagggctt4680
    .................. pBR322_origin............................
    ............................................................
    4681gggagaaaggcggacaggtatccggtaagcggcagggtcggaacaggagagcgcacgagg4740
    4681ccctctttccgcctgtccataggccattcgccgtcccagccttgtcctctcgcgtgctcc4740
    .................. pBR322_origin............................
    ............................................................
    4741gagcttccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctga4800
    4741ctcgaaggtccccctttgcggaccatagaaatatcaggacagcccaaagcggtggagact4800
    .................. pBR322_origin............................
    ............................................................
    4801cttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaacgccagc4860
    4801gaactcgcagctaaaaacactacgagcagtccccccgcctcggatacctttttgcggtcg4860
    .................. pBR322_origin............................
    ................................................. BglII(4919)
    4861aacgcggcctttttacggttcctggccttttgctggccttttgctcacatggctcgacag4920
    4861ttgcgccggaaaaatgccaaggaccggaaaacgaccggaaaacgagtgtaccgagctgtc4920
    ............................................................
    ............................................................
    4921atct........................................................4924
    4921taga........................................................4924
    ............................................................

    References



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