image of the BVTech Plasmid
Search plasmid maps in this site
Google
Web biovisualtech.com
More Plasmid Map Templates
  • Adenoviral
  • Bacterial expression
  • Cre/Lox
  • Insect expression
  • Lentiviral
  • Luciferase
  • Mammalian expression
  • Other
  • Retroviral
  • RNAi
  • Worm expression
  • Yeast expression
  • Bacterial vectors
  • Mammalian
  • Recent Release from EMBL
  • BVTech Plasmid

    This sequnce graph is created using BVTech Plasmid, which is DNA sequence analysis and plasmid drawing software for Windows PCs.You can use it to plan your DNA cloning, draw high quality plasmid maps, analyse your DNA sequencing data, align sequences, and much more.

    Free to try, $39.98 to buy

    Payments will be processed by PayPal. PayPal is the safer, easier way to pay.

    Sequence of p3xHA_hph_loxP

  • Download the sequence and plasmid map, and then use BVTech Plasmid to view and edit the file.
  • If you do not have BVTech Plasmid, download the latest version of BVTech Plasmid here.
  • View the plasmid map on line

    Sequence of p3xHA::hph::loxP: 5147 BP; 1217 A; 1426 C; 1304 G; 1200 T; 0 other;

    ............................................................
    1agcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggc60
    1tcgcgggttatgcgtttggcggagaggggcgcgcaaccggctaagtaattacgtcgaccg60
    ............................................................
    ............................................................
    61acgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagc120
    61tgctgtccaaagggctgacctttcgcccgtcactcgcgttgcgttaattacactcaatcg120
    ............................................................
    ............................................................
    121tcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaa180
    121agtgagtaatccgtggggtccgaaatgtgaaatacgaaggccgagcatacaacacacctt180
    ............................. lac_promoter...................
    ............................................................
    181ttgtgagcgaataacaatttcacacaggaaacagctatgaccatgattacgccaagctat240
    181aacactcgcttattgttaaagtgtgtcctttgtcgatactggtactaatgcggttcgata240
    .......................... M13_reverse_primer................
    ........................ HindIII(277) KpnI(287) SacI(293),BamHI(295)
    241ttaggtgacactatagaatactcaagctatgcatcaagcttggtaccgagctcggatcca300
    241aatccactgtgatatcttatgagttcgatacgtagttcgaaccatggctcgagcctaggt300
    Sp6_primer..................................................
    ............................................................
    301taacttcgtatagcatacattatacgaagttatcccggtcggcatctactctattccttt360
    301attgaagcatatcgtatgtaatatgcttcaatagggccagccgtagatgagataaggaaa360
    .......... loxP.............................. ORF 1
    ............................................................
    361gccctcggacgagtgctggggcgtcggtttccactatcggcgagtacttctacacagcca420
    361cgggagcctgctcacgaccccgcagccaaaggtgatagccgctcatgaagatgtgtcggt420
    .................... ORF 1..............................
    .......... EagI(432)........................................
    421tcggtccagacggccgcgcttctgcgggcgatttgtgtacgcccgacagtcccggctccg480
    421agccaggtctgccggcgcgaagacgcccgctaaacacatgcgggctgtcagggccgaggc480
    .................... ORF 1..............................
    ............................................................
    481gatcggacgattgcgtcgcatcgaccctgcgcccaagctgcatcatcgaaattgccgtca540
    481ctagcctgctaacgcagcgtagctgggacgcgggttcgacgtagtagctttaacggcagt540
    .................... ORF 1..............................
    ............................................................
    541accaagctctgatagagttggtcaagaccaatgcggagcatatacgcccggagccgcggc600
    541tggttcgagactatctcaaccagttctggttacgcctcgtatatgcgggcctcggcgccg600
    .................... ORF 1..............................
    ............................................................
    601gatcctgcaagctccggatgcctccgctcgaagtagcgcgtctgctgctccatacaagcc660
    601ctaggacgttcgaggcctacggaggcgagcttcatcgcgcagacgacgaggtatgttcgg660
    .................... ORF 1 ORF 1....................
    ............................................................
    661aaccacggcctccagaagaagatgttggcgacctcgtattgggaatccccgaacatcgcc720
    661ttggtgccggaggtcttcttctacaaccgctggagcataacccttaggggcttgtagcgg720
    ................... ORF 1 ORF 1.............................
    ............................................................
    721tcgctccagtcaatgaccgctgttatgcggccattgtccgtcaggacattgttggagccg780
    721agcgaggtcagttactggcgacaatacgccggtaacaggcagtcctgtaacaacctcggc780
    ................... ORF 1 ORF 1.............................
    ............................................................
    781aaatccgcgtgcacgaggtgccggacttcggggcagtcctcggcccaaagcatcagctca840
    781tttaggcgcacgtgctccacggcctgaagccccgtcaggagccgggtttcgtagtcgagt840
    ................... ORF 1 ORF 1.............................
    ............................................................
    841tcgagagcctgcgcgacggacgcactgacggtgtcgtccatcacagtttgccagtgatac900
    841agctctcggacgcgctgcctgcgtgactgccacagcaggtagtgtcaaacggtcactatg900
    ................... ORF 1 ORF 1.............................
    ............................................................
    901acatggggatcagcaatcgcgcatatgaaatcacgccatgtagtgtattgaccgattcct960
    901tgtacccctagtcgttagcgcgtatactttagtgcggtacatcacataactggctaagga960
    ................... ORF 1 ORF 1.............................
    ........................................ EagI(1002)..........
    961tgcggtccgaatgggccgaacccgctcgtctggctaagatcggccgcagcgatcgcatcc1020
    961acgccaggcttacccggcttgggcgagcagaccgattctagccggcgtcgctagcgtagg1020
    ................... ORF 1 ORF 1.............................
    ............................................................
    1021atggcctccgcgaccggctgcagaacagcgggcagttcggtttcaggcaggtcttgcaac1080
    1021taccggaggcgctggccgacgtcttgtcgcccgtcaagccaaagtccgtccagaacgttg1080
    ................... ORF 1 ORF 1.............................
    ............................................................
    1081gtgacaccctgtgcacggcgggagatgcaataggtcaggctctcgctgaattccccaatg1140
    1081cactgtgggacacgtgccgccctctacgttatccagtccgagagcgacttaaggggttac1140
    ................... ORF 1 ORF 1.............................
    .................... EagI(1167)..............................
    1141tcaagcacttccggaatcgggagcgcggccgatgcaaagtgccgataaacataacgatct1200
    1141agttcgtgaaggccttagccctcgcgccggctacgtttcacggctatttgtattgctaga1200
    ................... ORF 1 ORF 1.............................
    ............................................................
    1201ttgtagaaaccatcggcgcagctatttacccgcaggacatatccacgccctcctacatcg1260
    1201aacatctttggtagccgcgtcgataaatgggcgtcctgtataggtgcgggaggatgtagc1260
    ................... ORF 1 ORF 1.............................
    ............................................................
    1261aagctgaaagcacgagattcttcgccctccgagagctgcatcaggtcggagacgctgtcg1320
    1261ttcgactttcgtgctctaagaagcgggaggctctcgacgtagtccagcctctgcgacagc1320
    ................... ORF 1 ORF 1.............................
    .................................................. ClaI(1379)
    1321aacttttcgatcagaaacttctcgacagacgtcgcggtgagttcaggctttttcatatcg1380
    1321ttgaaaagctagtctttgaagagctgtctgcagcgccactcaagtccgaaaaagtatagc1380
    ................... ORF 1 ORF 1.............................
    ............................................................
    1381atgcttgggtagaataggtaagtcagattgaatctgaaataaagggaggaagggcgaact1440
    1381tacgaacccatcttatccattcagtctaacttagactttatttccctccttcccgcttga1440
    ORF 1..................................................
    ............................................................
    1441taagaaggtatgaccgggtcgttcacttaccttgcttgacaaacgcaccaagttatcgtg1500
    1441attcttccatactggcccagcaagtgaatggaacgaactgtttgcgtggttcaatagcac1500
    ............................................................
    ............................................................
    1501caccaagcagcagatgataataatgtcctcgttcctgtctgctaataagagtcacacttc1560
    1501gtggttcgtcgtctactattattacaggagcaaggacagacgattattctcagtgtgaag1560
    ............................................................
    ............................................................
    1561gagcgccgccgctactgctacaagtggggctgatctgaccagttgcctaaatgaaccatc1620
    1561ctcgcggcggcgatgacgatgttcaccccgactagactggtcaacggatttacttggtag1620
    ............................................................
    ............................................................
    1621ttgtcaaacgacacaaattttgtgctcaccgcctggacgactaaaccaaaataggcattc1680
    1621aacagtttgctgtgtttaaaacacgagtggcggacctgctgatttggttttatccgtaag1680
    ............................................................
    ............................................................
    1681attgttgacctccactagctccagccaagcccaaaaagtgctccttcaatatcatcttct1740
    1681taacaactggaggtgatcgaggtcggttcgggtttttcacgaggaagttatagtagaaga1740
    ............................................................
    SalI(1742)....................... ClaI(1785),HindIII(1790)...
    1741gtcgactagaataacttcgtatagcatacattatacgaagttatcgataagcttgatatc1800
    1741cagctgatcttattgaagcatatcgtatgtaatatgcttcaatagctattcgaactatag1800
    .................... loxP..............................
    EcoRI(1802)................................................
    1801gaattcctgcagcccgggggatctatattaccctgttatccctagcggatctgccggtag1860
    1801cttaaggacgtcgggccccctagatataatgggacaatagggatcgcctagacggccatc1860
    ............................................................
    ............................................................
    1861aggtgtggtcaataagagcgacctcatactatacctgagaaagcaacctgacctacagga1920
    1861tccacaccagttattctcgctggagtatgatatggactctttcgttggactggatgtcct1920
    ............................................................
    ............................................................
    1921aagagttactcaagaataagaattttcgttttaaaacctaagagtcactttaaaatttgt1980
    1921ttctcaatgagttcttattcttaaaagcaaaattttggattctcagtgaaattttaaaca1980
    .............................................. pHybLex_rev_primer
    ............................................................
    1981atacacttattttttttataacttatttaataataaaaatcataaatcataagaaattcg2040
    1981tatgtgaataaaaaaaatattgaataaattattatttttagtatttagtattctttaagc2040
    ............................................................
    .......... AscI(2056)........................................
    2041cttatttagaagtggcgcgcctcagcactgagcagcgtaatctggaacgtcatatggata2100
    2041gaataaatcttcaccgcgcggagtcgtgactcgtcgcattagaccttgcagtatacctat2100
    ............................................................
    ............................................................
    2101ggatcctgcatagtccgggacgtcatacggatagcccgcatagtcaggaacatcgtatgg2160
    2101cctaggacgtatcaggccctgcagtatgcctatcgggcgtatcagtccttgtagcatacc2160
    ............................................................
    .......... PacI(2176)........................................
    2161gtaaaagatgttaattaagcctccgcctccgcctccgccgcctccgcctcgagcatgcat2220
    2161cattttctacaattaattcggaggcggaggcggaggcggcggaggcggagctcgtacgta2220
    ............................................................
    XbaI(2221)..................................................
    2221ctagagggcccaattcgccctattcgaagtcgtattacaattcactggccgtcgttttac2280
    2221gatctcccgggttaagcgggataagcttcagcataatgttaagtgaccggcagcaaaatg2280
    ............................................. M13_forward20_primer
    ............................................................
    2281aacgtcgtgactgggaaaaccctggcgttacccaacttaatcgccttgcagcacatcccc2340
    2281ttgcagcactgacccttttgggaccgcaatgggttgaattagcggaacgtcgtgtagggg2340
    M13_pUC_fwd_primer..........................................
    ......... PvuII(2351).......................................
    2341ctttcgccagctggcgtaatagcgaagaggcccgcaccgatcgcccttcccaacagttgc2400
    2341gaaagcggtcgaccgcattatcgcttctccgggcgtggctagcgggaagggttgtcaacg2400
    ............................................................
    ............................................................
    2401gcagcctatacgtacggcagtttaaggtttacacctataaaagagagagccgttatcgtc2460
    2401cgtcggatatgcatgccgtcaaattccaaatgtggatattttctctctcggcaatagcag2460
    ............................................................
    ............................................................
    2461tgtttgtggatgtacagagtgatattattgacacgccggggcgacggatggtgatccccc2520
    2461acaaacacctacatgtctcactataataactgtgcggccccgctgcctaccactaggggg2520
    ............................................................
    ............................................................
    2521tggccagtgcacgtctgctgtcagataaagtctcccgtgaactttacccggtggtgcata2580
    2521accggtcacgtgcagacgacagtctatttcagagggcacttgaaatgggccaccacgtat2580
    ............................................................
    ............................................................
    2581tcggggatgaaagctggcgcatgatgaccaccgatatggccagtgtgccggtctccgtta2640
    2581agcccctactttcgaccgcgtactactggtggctataccggtcacacggccagaggcaat2640
    ............................................................
    ............................................................
    2641tcggggaagaagtggctgatctcagccaccgcgaaaatgacatcaaaaacgccattaacc2700
    2641agccccttcttcaccgactagagtcggtggcgcttttactgtagtttttgcggtaattgg2700
    ............................................................
    ............................................................
    2701tgatgttctggggaatataaatgtcaggcctgaatggcgaatggacgcgccctgtagcgg2760
    2701actacaagaccccttatatttacagtccggacttaccgcttacctgcgcgggacatcgcc2760
    ............................................................
    ............................................................
    2761cgcattaagcgcgcgggtgtggtggttacgcgcagcgtgaccgctacacttgccagcgcc2820
    2761gcgtaattcgcgcgcccacaccaccaatgcgcgtcgcactggcgatgtgaacggtcgcgg2820
    ............................................................
    ............................................................
    2821ctagcgcccgctcctttcgctttcttcccttcctttctcgccacgttcgccggctttccc2880
    2821gatcgcgggcgaggaaagcgaaagaagggaaggaaagagcggtgcaagcggccgaaaggg2880
    ............................................................
    ............................................................
    2881cgtcaagctctaaatcgggggctccctttagggttccgatttagagctttacggcacctc2940
    2881gcagttcgagatttagcccccgagggaaatcccaaggctaaatctcgaaatgccgtggag2940
    ............................................................
    ............................................................
    2941gaccgcaaaaaacttgatttgggtgatggttcacgtagtgggccatcgccctgatagacg3000
    2941ctggcgttttttgaactaaacccactaccaagtgcatcacccggtagcgggactatctgc3000
    ............................................................
    ............................................................
    3001gtttttcgccctttgacgttggagtccacgttctttaatagtggactcttgttccaaact3060
    3001caaaaagcgggaaactgcaacctcaggtgcaagaaattatcacctgagaacaaggtttga3060
    ............................................................
    ............................................................
    3061ggaacaacactcaaccctatcgcggtctattcttttgatttataagggatgttgccgatt3120
    3061ccttgttgtgagttgggatagcgccagataagaaaactaaatattccctacaacggctaa3120
    ............................................................
    ............................................................
    3121tcggcctattggttaaaaaatgagctgatttaacaaaaattttaacaaaattcagaagaa3180
    3121agccggataaccaattttttactcgactaaattgtttttaaaattgttttaagtcttctt3180
    .................................................. ORF 2
    ............................................................
    3181ctcgtcaagaaggcgatagaaggcgatgcgctgcgaatcgggagcggcgataccgtaaag3240
    3181gagcagttcttccgctatcttccgctacgcgacgcttagccctcgccgctatggcatttc3240
    .................... ORF 2..............................
    ............................................................
    3241cacgaggaagcggtcagcccattcgccgccaagctcttcagcaatatcacgggtagccaa3300
    3241gtgctccttcgccagtcgggtaagcggcggttcgagaagtcgttatagtgcccatcggtt3300
    .................... ORF 2..............................
    ............................................................
    3301cgctatgtcctgatagcggtccgccacacccagccggccacagtcgatgaatccagaaaa3360
    3301gcgatacaggactatcgccaggcggtgtgggtcggccggtgtcagctacttaggtctttt3360
    .................... ORF 2..............................
    ............................................................
    3361gcggccattttccaccatgatattcggcaagcaggcatcgccatgggtcacgacgagatc3420
    3361cgccggtaaaaggtggtactataagccgttcgtccgtagcggtacccagtgctgctctag3420
    .................... ORF 2..............................
    ............................................................
    3421ctcgccgtcgggcatgctcgccttgagcctggcgaacagttcggctggcgcgagcccctg3480
    3421gagcggcagcccgtacgagcggaactcggaccgcttgtcaagccgaccgcgctcggggac3480
    .................... ORF 2..............................
    ............................................................
    3481atgctcttcgtccagatcatcctgatcgacaagaccggcttccatccgagtacgtgctcg3540
    3481tacgagaagcaggtctagtaggactagctgttctggccgaaggtaggctcatgcacgagc3540
    .................... ORF 2..............................
    ............................................................
    3541ctcgatgcgatgtttcgcttggtggtcgaatgggcaggtagccggatcaagcgtatgcag3600
    3541gagctacgctacaaagcgaaccaccagcttacccgtccatcggcctagttcgcatacgtc3600
    .................... ORF 2..............................
    ............................................................
    3601ccgccgcattgcatcagccatgatggatactttctcggcaggagcaaggtgagatgacag3660
    3601ggcggcgtaacgtagtcggtactacctatgaaagagccgtcctcgttccactctactgtc3660
    .................... ORF 2..............................
    ............................................................
    3661gagatcctgccccggcacttcgcccaatagcagccagtcccttcccgcttcagtgacaac3720
    3661ctctaggacggggccgtgaagcgggttatcgtcggtcagggaagggcgaagtcactgttg3720
    .................... ORF 2..............................
    ......... PvuII(3732).......................................
    3721gtcgagcacagctgcgcaaggaacgcccgtcgtggccagccacgatagccgcgctgcctc3780
    3721cagctcgtgtcgacgcgttccttgcgggcagcaccggtcggtgctatcggcgcgacggag3780
    .................... ORF 2..............................
    ............................................................
    3781gtcttgcagttcattcagggcaccggacaggtcggtcttgacaaaaagaaccgggcgccc3840
    3781cagaacgtcaagtaagtcccgtggcctgtccagccagaactgtttttcttggcccgcggg3840
    .................... ORF 2..............................
    ............................................................
    3841ctgcgctgacagccggaacacggcggcatcagagcagccgattgtctgttgtgcccagtc3900
    3841gacgcgactgtcggccttgtgccgccgtagtctcgtcggctaacagacaacacgggtcag3900
    .................... ORF 2..............................
    ............................................................
    3901atagccgaatagcctctccacccaagcggccggagaacctgcgtgcaatccatcttgttc3960
    3901tatcggcttatcggagaggtgggttcgccggcctcttggacgcacgttaggtagaacaag3960
    .................... ORF 2..............................
    ............................................................
    3961aatcatgcgaaacgatcctcatcctgtctcttgatcagagcttgatcccctgcgccatca4020
    3961ttagtacgctttgctaggagtaggacagagaactagtctcgaactaggggacgcggtagt4020
    ............................................................
    ............................................................
    4021gatccttggcggcgagaaagccatccagtttactttgcagggcttcccaaccttaccaga4080
    4021ctaggaaccgccgctctttcggtaggtcaaatgaaacgtcccgaagggttggaatggtct4080
    ..................................... NEOKAN_promoter.......
    ......... PvuII(4092).......................................
    4081gggcgccccagctggcaattccggttcgcttgctgtccataaaaccgcccagtctagcta4140
    4081cccgcggggtcgaccgttaaggccaagcgaacgacaggtattttggcgggtcagatcgat4140
    ....... NEOKAN_promoter.....................................
    ............................................................
    4141tcgccatgtaagcccactgcaagctacctgctttctctttgcgcttgcgttttcccttgt4200
    4141agcggtacattcgggtgacgttcgatggacgaaagagaaacgcgaacgcaaaagggaaca4200
    ............................................................
    ............................................................
    4201ccagatagcccagtagctgacattcatccggggtcagcaccgtttctgcggactggcttt4260
    4201ggtctatcgggtcatcgactgtaagtaggccccagtcgtggcaaagacgcctgaccgaaa4260
    ............................................................
    ............................................................
    4261ctacgtgaaaaggatctaggtgaagatcctttttgataatctcatgaccaaaatccctta4320
    4261gatgcacttttcctagatccacttctaggaaaaactattagagtactggttttagggaat4320
    ............................................................
    ............................................................
    4321acgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatcttcttg4380
    4321tgcactcaaaagcaaggtgactcgcagtctggggcatcttttctagtttcctagaagaac4380
    ............................................................
    ............................................................
    4381agatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgctaccagc4440
    4381tctaggaaaaaaagacgcgcattagacgacgaacgtttgtttttttggtggcgatggtcg4440
    ............................................................
    ............................................................
    4441ggtggtttgtttgccggatcaagagctaccaactctttttccgaaggtaactggcttcag4500
    4441ccaccaaacaaacggcctagttctcgatggttgagaaaaaggcttccattgaccgaagtc4500
    ............................................................
    ............................................................
    4501cagagcgcagataccaaatactgtccttctagtgtagccgtagttaggccaccacttcaa4560
    4501gtctcgcgtctatggtttatgacaggaagatcacatcggcatcaatccggtggtgaagtt4560
    ............................................................
    ............................................................
    4561gaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccagtggctgctgc4620
    4561cttgagacatcgtggcggatgtatggagcgagacgattaggacaatggtcaccgacgacg4620
    ............................................................
    ............................................................
    4621cagtggcgataagtcgtgtcttaccgggttggactcaagacgatagttaccggataaggc4680
    4621gtcaccgctattcagcacagaatggcccaacctgagttctgctatcaatggcctattccg4680
    ............................................................
    ............................................................
    4681gcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacgaccta4740
    4681cgtcgccagcccgacttgccccccaagcacgtgtgtcgggtcgaacctcgcttgctggat4740
    ............................................................
    ............................................................
    4741caccgaactgagatacctacagcgtgagctatgagaaagcgccacgcttcccgaagggag4800
    4741gtggcttgactctatggatgtcgcactcgatactctttcgcggtgcgaagggcttccctc4800
    ............................................................
    ............................................................
    4801aaaggcggacaggtatccggtaagcggcagggtcggaacaggagagcgcacgagggagct4860
    4801tttccgcctgtccataggccattcgccgtcccagccttgtcctctcgcgtgctccctcga4860
    ............................................................
    ............................................................
    4861tccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttga4920
    4861aggtccccctttgcggaccatagaaatatcaggacagcccaaagcggtggagactgaact4920
    ............................................................
    ............................................................
    4921gcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaacgccagcaacgc4980
    4921cgcagctaaaaacactacgagcagtccccccgcctcggatacctttttgcggtcgttgcg4980
    ............................................................
    ............................................................
    4981ggcctttttacggttcctgggcttttgctggccttttgctcacatgttctttcctgcgtt5040
    4981ccggaaaaatgccaaggacccgaaaacgaccggaaaacgagtgtacaagaaaggacgcaa5040
    ............................................................
    ............................................................
    5041atcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccg5100
    5041taggggactaagacacctattggcataatggcggaaactcactcgactatggcgagcggc5100
    ............................................................
    ............................................................
    5101cagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaag.............5147
    5101gtcggcttgctggctcgcgtcgctcagtcactcgctccttcgccttc.............5147
    ............................................................

    References

    Reference number: [1] Reference positions: 1-5147 Reference author: Honda S., Selker E.U.; Reference title: "Tools for fungal proteomics: Multifunctional Neurospora vectors for gene Reference title: replacement, protein expression and protein purification"; Reference location: Genetics 0:0-0(2009).
    Reference number: [2] Reference positions: 1-5147 Reference author: Honda S., Selker E.U.; Reference title: ; Reference location: Submitted (11-NOV-2008) to the EMBL/GenBank/DDBJ databases. Reference location: Institute of Molecular Biology, University of Oregon, Eugene, OR 97403, USA



  • Copyright 2005 BVTech, Inc. All Rights Reserved