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Sequence of pAcGFP1-N1
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Sequence of pAcGFP1-N1
: 4726 BP; 1138 A; 1268 C; 1240 G; 1080 T; 0 other; |
| AseI(7) | .......... | .......... | .......... | .......... | .......... |
| 1 | tagttattaa | tagtaatcaa | ttacggggtc | attagttcat | agcccatata | tggagttccg | 60 |
| 1 | atcaataatt | atcattagtt | aatgccccag | taatcaagta | tcgggtatat | acctcaaggc | 60 |
| .......... | .......... | ....... | CMV_immearly_pro | ....... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 61 | cgttacataa | cttacggtaa | atggcccgcc | tggctgaccg | cccaacgacc | <
font color="#000000" style="font-size:10px" face="Courier">cccgcccatt | 120 |
| 61 | gcaatgtatt | gaatgccatt | taccgggcgg | accgactggc | gggttgctgg | gggcgggtaa | 120 |
| .......... | ....... | CMV_immearly_pro | CAG_enh | ....... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 121 | gacgtcaata | atgacgtatg | ttcccatagt | aacgccaata | gggactttcc |
attgacgtca | 180 |
| 121 | ctgcagttat | tactgcatac | aagggtatca | ttgcggttat | ccctgaaagg | taactgcagt | 180 |
| .......... | ... | CAG_enh CMV_immearly_pro | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | NdeI(234) |
| 181 | atgggtggag | tatttacggt | aaactgccca | cttggcagta | catcaagtgt |
atcatatgcc | 240 |
| 181 | tacccacctc | ataaatgcca | tttgacgggt | gaaccgtcat | gtagttcaca | tagtatacgg | 240 |
| .......... | ... | CAG_enh CMV_immearly_pro | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 241 | aagtacgccc | cctattgacg | tcaatgacgg | taaatggccc | gcctggcatt |
atgcccagta | 300 |
| 241 | ttcatgcggg | ggataactgc | agttactgcc | atttaccggg | cggaccgtaa | tacgggtcat | 300 |
| .......... | ... | CAG_enh CMV_immearly_pro | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 301 | catgacctta | tgggactttc | ctacttggca | gtacatctac | gtattagtca |
tcgctattac | 360 |
| 301 | gtactggaat | accctgaaag | gatgaaccgt | catgtagatg | cataatcagt | agcgataatg | 360 |
| .......... | ... | CAG_enh CMV_immearly_pro | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 361 | catggtgatg | cggttttggc | agtacatcaa | tgggcgtgga | tagcggtttg | actcacgggg | 420 |
| 361 | gtaccactac | gccaaaaccg | tcatgtagtt | acccgcacct | atcgccaaac | tgagtgcccc | 420 |
| .......... | ....... | CMV_immearly_pro | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 421 | atttccaagt | ctccacccca | ttgacgtcaa | tgggagtttg | ttttggcacc | aaaatcaacg | 480 |
| 421 | taaaggttca | gaggtggggt | aactgcagtt | accctcaaac | aaaaccgtgg | ttttagttgc | 480 |
| .......... | ....... | CMV_immearly_pro | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 481 | ggactttcca | aaatgtcgta | acaactccgc | cccattgacg | caaatgggcg | gtaggcgtgt | 540 |
| 481 | cctgaaaggt | tttacagcat | tgttgaggcg | gggtaactgc | gtttacccgc | catccgcaca | 540 |
| .......... | ....... | CMV_immearly_pro | .. | CMV_fwd_pri CMV_pro | ..... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 541 | acggtgggag | gtctatataa | gcagagctgg | tttagtgaac | cgtcagatcc | gctagcgcta | 600 |
| 541 | tgccaccctc | cagatatatt | cgtctcgacc | aaatcacttg | gcagtctagg | cgatcgcgat | 600 |
| ....... | CMV_immearly_pro | CMV_pro | ....... | .......... | .......... |
| BglII,XhoI | SacI,HindIII EcoRI | PstI(638),SalI(639) | | |
| 601 | ccggactcag | atctcgagct | caagcttcga | attctgcagt | cgacggtacc | gcgggcccgg | 660 |
| 601 | ggcctgagtc | tagagctcga | gttcgaagct | taagacgtca | gctgccatgg | cgcccgggcc | 660 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| AgeI(666) | .......... | .......... | .......... | .......... | .......... |
| 661 | gatccaccgg | tcatggtgag | caagggcgcc | gagctgttca | ccggcatcgt | gcccatcctg | 720 |
| 661 | ctaggtggcc | agtaccactc | gttcccgcgg | ctcgacaagt | ggccgtagca | cgggtaggac | 720 |
| .......... | .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 721 | atcgagctga | atggcgatgt | gaatggccac | aagttcagcg | tgagcggcga |
gggcgagggc | 780 |
| 721 | tagctcgact | taccgctaca | cttaccggtg | ttcaagtcgc | actcgccgct | cccgctcccg | 780 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 781 | gatgccacct | acggcaagct | gaccctgaag | ttcatctgca | ccaccggcaa |
gctgcctgtg | 840 |
| 781 | ctacggtgga | tgccgttcga | ctgggacttc | aagtagacgt | ggtggccgtt | cgacggacac | 840 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 841 | ccctggccca | ccctggtgac | caccctgagc | tacggcgtgc | agtgcttctc |
acgctacccc | 900 |
| 841 | gggaccgggt | gggaccactg | gtgggactcg | atgccgcacg | tcacgaagag | tgcgatgggg | 900 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 901 | gatcacatga | agcagcacga | cttcttcaag | agcgccatgc | ctgagggcta |
catccaggag | 960 |
| 901 | ctagtgtact | tcgtcgtgct | gaagaagttc | tcgcggtacg | gactcccgat | gtaggtcctc | 960 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 961 | cgcaccatct | tcttcgagga | tgacggcaac | tacaagtcgc | gcgccgaggt |
gaagttcgag | 1020 |
| 961 | gcgtggtaga | agaagctcct | actgccgttg | atgttcagcg | cgcggctcca | cttcaagctc | 1020 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1021 | ggcgataccc | tggtgaatcg | catcgagctg | accggcaccg | atttcaagga | ggatggcaac | 1080 |
| 1021 | ccgctatggg | accacttagc | gtagctcgac | tggccgtggc | taaagttcct | cctaccgttg | 1080 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1081 | atcctgggca | ataagatgga | gtacaactac | aacgcccaca | atgtgtacat | catgaccgac | 1140 |
| 1081 | taggacccgt | tattctacct | catgttgatg | ttgcgggtgt | tacacatgta | gtactggctg | 1140 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1141 | aaggccaaga | atggcatcaa | ggtgaacttc | aagatccgcc | acaacatcga | ggatggcagc | 1200 |
| 1141 | ttccggttct | taccgtagtt | ccacttgaag | ttctaggcgg | tgttgtagct | cctaccgtcg | 1200 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1201 | gtgcagctgg | ccgaccacta | ccagcagaat | acccccatcg | gcgatggccc | tgtgctgctg | 1260 |
| 1201 | cacgtcgacc | ggctggtgat | ggtcgtctta | tgggggtagc | cgctaccggg | acacgacgac | 1260 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1261 | cccgataacc | actacctgtc | cacccagagc | gccctgtcca | aggaccccaa | cgagaagcgc | 1320 |
| 1261 | gggctattgg | tgatggacag | gtgggtctcg | cgggacaggt | tcctggggtt | gctcttcgcg | 1320 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1321 | gatcacatga | tctacttcgg | cttcgtgacc | gccgccgcca | tcacccacgg | catggatgag | 1380 |
| 1321 | ctagtgtact | agatgaagcc | gaagcactgg | cggcggcggt | agtgggtgcc | gtacctactc | 1380 |
| .......... | ...... | EGFP(0-717) ORF 1 | ...... | .......... | .......... |
| .......... | NotI(1394) | .......... | .......... | .......... | .......... |
| 1381 | ctgtacaagt | gagcggccgc | gactctagat | cataatcagc | cataccacat | ttgtagaggt | 1440 |
| 1381 | gacatgttca | ctcgccggcg | ctgagatcta | gtattagtcg | gtatggtgta | aacatctcca | 1440 |
| EGFP(0-717) ORF 1 | .. | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1441 | tttacttgct | ttaaaaaacc | tcccacacct | ccccctgaac | ctgaaacata | aaatgaatgc | 1500 |
| 1441 | aaatgaacga | aattttttgg | agggtgtgga | gggggacttg | gactttgtat | tttacttacg | 1500 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | HpaI(1513) | .......... | .......... | .......... | .......... |
| 1501 | aattgttgtt | gttaacttgt | ttattgcagc | ttataatggt | tacaaataaa | gcaatagcat | 1560 |
| 1501 | ttaacaacaa | caattgaaca | aataacgtcg | aatattacca | atgtttattt | cgttatcgta | 1560 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1561 | cacaaatttc | acaaataaag | catttttttc | actgcattct | agttgtggtt | tgtccaaact | 1620 |
| 1561 | gtgtttaaag | tgtttatttc | gtaaaaaaag | tgacgtaaga | tcaacaccaa | acaggtttga | 1620 |
| .......... | .......... | .......... | .......... | ......... | EBV_rev_pri |
| ......... | AflII(1632) | ......... | .......... | .......... | .......... |
| 1621 | catcaatgta | tcttaaggcg | taaattgtaa | gcgttaatat | tttgttaaaa | ttcgcgttaa | 1680 |
| 1621 | gtagttacat | agaattccgc | atttaacatt | cgcaattata | aaacaatttt | aagcgcaatt | 1680 |
| EBV_rev_pri | ........ | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1681 | atttttgtta | aatcagctca | ttttttaacc | aataggccga | aatcggcaaa | atcccttata | 1740 |
| 1681 | taaaaacaat | ttagtcgagt | aaaaaattgg | ttatccggct | ttagccgttt | tagggaatat | 1740 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1741 | aatcaaaaga | atagaccgag | atagggttga | gtgttgttcc | agtttggaac | aagagtccac | 1800 |
| 1741 | ttagttttct | tatctggctc | tatcccaact | cacaacaagg | tcaaaccttg | ttctcaggtg | 1800 |
| .......... | .......... | .......... | .......... | f1_origin | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1801 | tattaaagaa | cgtggactcc | aacgtcaaag | ggcgaaaaac | cgtctatcag | ggcgatggcc | 1860 |
| 1801 | ataatttctt | gcacctgagg | ttgcagtttc | ccgctttttg | gcagatagtc | ccgctaccgg | 1860 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1861 | cactacgtga | accatcaccc | taatcaagtt | ttttggggtc | gaggtgccgt | aaagcactaa | 1920 |
| 1861 | gtgatgcact | tggtagtggg | attagttcaa | aaaaccccag | ctccacggca | tttcgtgatt | 1920 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1921 | atcggaaccc | taaagggagc | ccccgattta | gagcttgacg | gggaaagccg | gcgaacgtgg | 1980 |
| 1921 | tagccttggg | atttccctcg | ggggctaaat | ctcgaactgc | ccctttcggc | cgcttgcacc | 1980 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1981 | cgagaaagga | agggaagaaa | gcgaaaggag | cgggcgctag | ggcgctggca | agtgtagcgg | 2040 |
| 1981 | gctctttcct | tcccttcttt | cgctttcctc | gcccgcgatc | ccgcgaccgt | tcacatcgcc | 2040 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2041 | tcacgctgcg | cgtaaccacc | acacccgccg | cgcttaatgc | gccgctacag | ggcgcgtcag | 2100 |
| 2041 | agtgcgacgc | gcattggtgg | tgtgggcggc | gcgaattacg | cggcgatgtc | ccgcgcagtc | 2100 |
| .......... | f1_origin | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2101 | gtggcacttt | tcggggaaat | gtgcgcggaa | cccctatttg | tttatttttc | taaatacatt | 2160 |
| 2101 | caccgtgaaa | agccccttta | cacgcgcctt | ggggataaac | aaataaaaag | atttatgtaa | 2160 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2161 | caaatatgta | tccgctcatg | agacaataac | cctgataaat | gcttcaataa | tattgaaaaa | 2220 |
| 2161 | gtttatacat | aggcgagtac | tctgttattg | ggactattta | cgaagttatt | ataacttttt | 2220 |
| .......... | AmpR_pro | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2221 | ggaagagtcc | tgaggcggaa | agaaccagct | gtggaatgtg | tgtcagttag | ggtgtggaaa | 2280 |
| 2221 | ccttctcagg | actccgcctt | tcttggtcga | caccttacac | acagtcaatc | ccacaccttt | 2280 |
| .......... | .......... | .......... | ..... | pBABE_3_pri SV40_enh | SV40_pro |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2281 | gtccccaggc | tccccagcag | gcagaagtat | gcaaagcatg | catctcaatt | agtcagcaac | 2340 |
| 2281 | caggggtccg | aggggtcgtc | cgtcttcata | cgtttcgtac | gtagagttaa | tcagtcgttg | 2340 |
| .......... | ...... | SV40_enh SV40_pro | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2341 | caggtgtgga | aagtccccag | gctccccagc | aggcagaagt | atgcaaagca | tgcatctcaa | 2400 |
| 2341 | gtccacacct | ttcaggggtc | cgaggggtcg | tccgtcttca | tacgtttcgt | acgtagagtt | 2400 |
| .......... | ...... | SV40_enh SV40_pro | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2401 | ttagtcagca | accatagtcc | cgcccctaac | tccgcccatc | ccgcccctaa | c
tccgcccag | 2460 |
| 2401 | aatcagtcgt | tggtatcagg | gcggggattg | aggcgggtag | ggcggggatt | gaggcgggtc | 2460 |
| .......... | ...... | SV40_enh SV40_pro | ..... | SV40_origin | ......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2461 | ttccgcccat | tctccgcccc | atggctgact | aatttttttt | atttatgcag | aggccgaggc | 2520 |
| 2461 | aaggcgggta | agaggcgggg | taccgactga | ttaaaaaaaa | taaatacgtc | tccggctccg | 2520 |
| SV40_enh | ..... | SV40_pro SV40_origin | ... | SV40pro_F_pri | ........ |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2521 | cgcctcggcc | tctgagctat | tccagaagta | gtgaggaggc | ttttttggag | gcctaggctt | 2580 |
| 2521 | gcggagccgg | agactcgata | aggtcttcat | cactcctccg | aaaaaacctc | cggatccgaa | 2580 |
| SV40_pro | .......... | .......... | .......... | .......... | .......... |
| ClaI(2590) | .......... | .......... | .......... | .......... | .......... |
| 2581 | ttgcaaagat | cgatcaagag | acaggatgag | gatcgtttcg | catgattgaa | caagatggat | 2640 |
| 2581 | aacgtttcta | gctagttctc | tgtcctactc | ctagcaaagc | gtactaactt | gttctaccta | 2640 |
| .......... | .......... | .......... | .......... | ........ | ORF 3 Neomycin |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2641 | tgcacgcagg | ttctccggcc | gcttgggtgg | agaggctatt | cggctatgac | tgggcacaac | 2700 |
| 2641 | acgtgcgtcc | aagaggccgg | cgaacccacc | tctccgataa | gccgatactg | acccgtgttg | 2700 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2701 | agacaatcgg | ctgctctgat | gccgccgtgt | tccggctgtc | agcgcagggg | cgcccggttc | 2760 |
| 2701 | tctgttagcc | gacgagacta | cggcggcaca | aggccgacag | tcgcgtcccc | gcgggccaag | 2760 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2761 | tttttgtcaa | gaccgacctg | tccggtgccc | tgaatgaact | gcaagacgag | gcagcgcggc | 2820 |
| 2761 | aaaaacagtt | ctggctggac | aggccacggg | acttacttga | cgttctgctc | cgtcgcgccg | 2820 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | FspI(2852) | .......... | .......... |
| 2821 | tatcgtggct | ggccacgacg | ggcgttcctt | gcgcagctgt | gctcgacgtt | gtcactgaag | 2880 |
| 2821 | atagcaccga | ccggtgctgc | ccgcaaggaa | cgcgtcgaca | cgagctgcaa | cagtgacttc | 2880 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2881 | cgggaaggga | ctggctgcta | ttgggcgaag | tgccggggca | ggatctcctg | tcatctcacc | 2940 |
| 2881 | gcccttccct | gaccgacgat | aacccgcttc | acggccccgt | cctagaggac | agtagagtgg | 2940 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2941 | ttgctcctgc | cgagaaagta | tccatcatgg | ctgatgcaat | gcggcggctg | catacgcttg | 3000 |
| 2941 | aacgaggacg | gctctttcat | aggtagtacc | gactacgtta | cgccgccgac | gtatgcgaac | 3000 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3001 | atccggctac | ctgcccattc | gaccaccaag | cgaaacatcg | catcgagcga | gcacgtactc | 3060 |
| 3001 | taggccgatg | gacgggtaag | ctggtggttc | gctttgtagc | gtagctcgct | cgtgcatgag | 3060 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3061 | ggatggaagc | cggtcttgtc | gatcaggatg | atctggacga | agagcatcag | gggctcgcgc | 3120 |
| 3061 | cctaccttcg | gccagaacag | ctagtcctac | tagacctgct | tctcgtagtc | cccgagcgcg | 3120 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3121 | cagccgaact | gttcgccagg | ctcaaggcga | gcatgcccga | cggcgaggat | ctcgtcgtga | 3180 |
| 3121 | gtcggcttga | caagcggtcc | gagttccgct | cgtacgggct | gccgctccta | gagcagcact | 3180 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3181 | cccatggcga | tgcctgcttg | ccgaatatca | tggtggaaaa | tggccgcttt | tctggattca | 3240 |
| 3181 | gggtaccgct | acggacgaac | ggcttatagt | accacctttt | accggcgaaa | agacctaagt | 3240 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3241 | tcgactgtgg | ccggctgggt | gtggcggacc | gctatcagga | catagcgttg | gctacccgtg | 3300 |
| 3241 | agctgacacc | ggccgaccca | caccgcctgg | cgatagtcct | gtatcgcaac | cgatgggcac | 3300 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3301 | atattgctga | agagcttggc | ggcgaatggg | ctgaccgctt | cctcgtgctt | tacggtatcg | 3360 |
| 3301 | tataacgact | tctcgaaccg | ccgcttaccc | gactggcgaa | ggagcacgaa | atgccatagc | 3360 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3361 | ccgctcccga | ttcgcagcgc | atcgccttct | atcgccttct | tgacgagttc | ttctgagcgg | 3420 |
| 3361 | ggcgagggct | aagcgtcgcg | tagcggaaga | tagcggaaga | actgctcaag | aagactcgcc | 3420 |
| .......... | ........ | ORF 3 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3421 | gactctgggg | ttcgaaatga | ccgaccaagc | gacgcccaac | ctgccatcac | gagatttcga | 3480 |
| 3421 | ctgagacccc | aagctttact | ggctggttcg | ctgcgggttg | gacggtagtg | ctctaaagct | 3480 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3481 | ttccaccgcc | gccttctatg | aaaggttggg | cttcggaatc | gttttccggg | acgccggctg | 3540 |
| 3481 | aaggtggcgg | cggaagatac | tttccaaccc | gaagccttag | caaaaggccc | tgcggccgac | 3540 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3541 | gatgatcctc | cagcgcgggg | atctcatgct | ggagttcttc | gcccacccta | gggggaggct | 3600 |
| 3541 | ctactaggag | gtcgcgcccc | tagagtacga | cctcaagaag | cgggtgggat | ccccctccga | 3600 |
| .......... | .......... | .......... | .......... | .......... | TK_PA_term |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3601 | aactgaaaca | cggaaggaga | caataccgga | aggaacccgc | gctatgacgg | caataaaaag | 3660 |
| 3601 | ttgactttgt | gccttcctct | gttatggcct | tccttgggcg | cgatactgcc | gttatttttc | 3660 |
| .......... | .......... | TK_PA_term | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3661 | acagaataaa | acgcacggtg | ttgggtcgtt | tgttcataaa | cgcggggttc | ggtcccaggg | 3720 |
| 3661 | tgtcttattt | tgcgtgccac | aacccagcaa | acaagtattt | gcgccccaag | ccagggtccc | 3720 |
| .......... | .......... | TK_PA_term | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3721 | ctggcactct | gtcgataccc | caccgagacc | ccattggggc | caatacgccc | gcgtttcttc | 3780 |
| 3721 | gaccgtgaga | cagctatggg | gtggctctgg | ggtaaccccg | gttatgcggg | cgcaaagaag | 3780 |
| .......... | .......... | TK_PA_term | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3781 | cttttcccca | ccccaccccc | caagttcggg | tgaaggccca | gggctcgcag | ccaacgtcgg | 3840 |
| 3781 | gaaaaggggt | ggggtggggg | gttcaagccc | acttccgggt | cccgagcgtc | ggttgcagcc | 3840 |
| .......... | .......... | TK_PA_term | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3841 | ggcggcaggc | cctgccatag | cctcaggtta | ctcatatata | ctttagattg | atttaaaact | 3900 |
| 3841 | ccgccgtccg | ggacggtatc | ggagtccaat | gagtatatat | gaaatctaac | taaattttga | 3900 |
| TK_PA_term | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3901 | tcatttttaa | tttaaaagga | tctaggtgaa | gatccttttt | gataatctca | tgaccaaaat | 3960 |
| 3901 | agtaaaaatt | aaattttcct | agatccactt | ctaggaaaaa | ctattagagt | actggtttta | 3960 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3961 | cccttaacgt | gagttttcgt | tccactgagc | gtcagacccc | gtagaaaaga | tcaaaggatc | 4020 |
| 3961 | gggaattgca | ctcaaaagca | aggtgactcg | cagtctgggg | catcttttct | agtttcctag | 4020 |
| .......... | .......... | .......... | .......... | ........ | pBR322_origin |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4021 | ttcttgagat | cctttttttc | tgcgcgtaat | ctgctgcttg | caaacaaaaa | aaccaccgct | 4080 |
| 4021 | aagaactcta | ggaaaaaaag | acgcgcatta | gacgacgaac | gtttgttttt | ttggtggcga | 4080 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4081 | accagcggtg | gtttgtttgc | cggatcaaga | gctaccaact | ctttttccga | aggtaactgg | 4140 |
| 4081 | tggtcgccac | caaacaaacg | gcctagttct | cgatggttga | gaaaaaggct | tccattgacc | 4140 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4141 | cttcagcaga | gcgcagatac | caaatactgt | ccttctagtg | tagccgtagt | taggccacca | 4200 |
| 4141 | gaagtcgtct | cgcgtctatg | gtttatgaca | ggaagatcac | atcggcatca | atccggtggt | 4200 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4201 | cttcaagaac | tctgtagcac | cgcctacata | cctcgctctg | ctaatcctgt | taccagtggc | 4260 |
| 4201 | gaagttcttg | agacatcgtg | gcggatgtat | ggagcgagac | gattaggaca | atggtcaccg | 4260 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4261 | tgctgccagt | ggcgataagt | cgtgtcttac | cgggttggac | tcaagacgat | agttaccgga | 4320 |
| 4261 | acgacggtca | ccgctattca | gcacagaatg | gcccaacctg | agttctgcta | tcaatggcct | 4320 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | ......... | ApaLI(4354) | ......... | .......... |
| 4321 | taaggcgcag | cggtcgggct | gaacgggggg | ttcgtgcaca | cagcccagct | tggagcgaac | 4380 |
| 4321 | attccgcgtc | gccagcccga | cttgcccccc | aagcacgtgt | gtcgggtcga | acctcgcttg | 4380 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4381 | gacctacacc | gaactgagat | acctacagcg | tgagctatga | gaaagcgcca | cgcttcccga | 4440 |
| 4381 | ctggatgtgg | cttgactcta | tggatgtcgc | actcgatact | ctttcgcggt | gcgaagggct | 4440 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4441 | agggagaaag | gcggacaggt | atccggtaag | cggcagggtc | ggaacaggag | agcgcacgag | 4500 |
| 4441 | tccctctttc | cgcctgtcca | taggccattc | gccgtcccag | ccttgtcctc | tcgcgtgctc | 4500 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4501 | ggagcttcca | gggggaaacg | cctggtatct | ttatagtcct | gtcgggtttc | gccacctctg | 4560 |
| 4501 | cctcgaaggt | ccccctttgc | ggaccataga | aatatcagga | cagcccaaag | cggtggagac | 4560 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4561 | acttgagcgt | cgatttttgt | gatgctcgtc | aggggggcgg | agcctatgga | aaaacgccag | 4620 |
| 4561 | tgaactcgca | gctaaaaaca | ctacgagcag | tccccccgcc | tcggatacct | ttttgcggtc | 4620 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4621 | caacgcggcc | tttttacggt | tcctggcctt | ttgctggcct | tttgctcaca | tgttctttcc | 4680 |
| 4621 | gttgcgccgg | aaaaatgcca | aggaccggaa | aacgaccgga | aaacgagtgt | acaagaaagg | 4680 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4681 | tgcgttatcc | cctgattctg | tggataaccg | tattaccgcc | atgcat.... | .......... | 4726 |
| 4681 | acgcaatagg | ggactaagac | acctattggc | ataatggcgg | tacgta.... | .......... | 4726 |
| .......... | .......... | .......... | .......... | .......... | .......... |
References
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