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  • BVTech Plasmid

    This sequnce graph is created using BVTech Plasmid, which is DNA sequence analysis and plasmid drawing software for Windows PCs.You can use it to plan your DNA cloning, draw high quality plasmid maps, analyse your DNA sequencing data, align sequences, and much more.

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    Sequence of pAsRed2-C1

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    Sequence of pAsRed2-C1 : 4710 BP; 1105 A; 1300 C; 1240 G; 1065 T; 0 other;

    AseI(7)..................................................
    1tagttattaatagtaatcaattacggggtcattagttcatagcccatatatggagttccg60
    1atcaataattatcattagttaatgccccagtaatcaagtatcgggtatatacctcaaggc60
    ........................... CMV_immearly_pro.................
    ............................................................
    61cgttacataacttacggtaaatggcccgcctggctgaccgcccaacgacc< font color="#000000" style="font-size:10px" face="Courier">cccgcccatt120
    61gcaatgtattgaatgccatttaccgggcggaccgactggcgggttgctgggggcgggtaa120
    ................. CMV_immearly_pro CAG_enh.................
    ............................................................
    121gacgtcaataatgacgtatgttcccatagtaacgccaatagggactttcc attgacgtca180
    121ctgcagttattactgcatacaagggtatcattgcggttatccctgaaaggtaactgcagt180
    ............. CAG_enh CMV_immearly_pro.......................
    .................................................. NdeI(234)
    181atgggtggagtatttacggtaaactgcccacttggcagtacatcaagtgt atcatatgcc240
    181tacccacctcataaatgccatttgacgggtgaaccgtcatgtagttcacatagtatacgg240
    ............. CAG_enh CMV_immearly_pro.......................
    ............................................................
    241aagtacgccccctattgacgtcaatgacggtaaatggcccgcctggcatt atgcccagta300
    241ttcatgcgggggataactgcagttactgccatttaccgggcggaccgtaatacgggtcat300
    ............. CAG_enh CMV_immearly_pro.......................
    ............................................................
    301catgaccttatgggactttcctacttggcagtacatctacgtattagtca tcgctattac360
    301gtactggaataccctgaaaggatgaaccgtcatgtagatgcataatcagtagcgataatg360
    ............. CAG_enh CMV_immearly_pro.......................
    ............................................................
    361catggtgatgcggttttggcagtacatcaatgggcgtggatagcggtttgactcacgggg420
    361gtaccactacgccaaaaccgtcatgtagttacccgcacctatcgccaaactgagtgcccc420
    ................. CMV_immearly_pro...........................
    ............................................................
    421atttccaagtctccaccccattgacgtcaatgggagtttgttttggcaccaaaatcaacg480
    421taaaggttcagaggtggggtaactgcagttaccctcaaacaaaaccgtggttttagttgc480
    ................. CMV_immearly_pro...........................
    ............................................................
    481ggactttccaaaatgtcgtaacaactccgccccattgacgcaaatgggcggtaggcgtgt540
    481cctgaaaggttttacagcattgttgaggcggggtaactgcgtttacccgccatccgcaca540
    ................. CMV_immearly_pro.. CMV_fwd_pri CMV_pro.....
    ............................................. NheI(591) AgeI(600)
    541acggtgggaggtctatataagcagagctggtttagtgaaccgtcagatccgctagcgcta600
    541tgccaccctccagatatattcgtctcgaccaaatcacttggcagtctaggcgatcgcgat600
    ....... CMV_immearly_pro CMV_pro...........................
    ............................................................
    601ccggtcgccaccatggcctctttgctgaagaagaccatgcccttcaggaccaccatcgag660
    601ggccagcggtggtaccggagaaacgacttcttctggtacgggaagtcctggtggtagctc660
    .................... ORF 1 ORF 1....................
    ............................................................
    661ggcaccgtgaacggccactacttcaagtgcaccggcaagggcgagggcaaccccctggag720
    661ccgtggcacttgccggtgatgaagttcacgtggccgttcccgctcccgttgggggacctc720
    ................... ORF 1 ORF 1.............................
    ............................................................
    721ggcacccaggagatgaagatcgaggtgatcgagggcggccccctgcccttcgccttccac780
    721ccgtgggtcctctacttctagctccactagctcccgccgggggacgggaagcggaaggtg780
    ................... ORF 1 ORF 1.............................
    ............................................................
    781atcctgtccacctcctgcatgtacggctccaaggccttcatcaagtacgtgtccggcatc840
    781taggacaggtggaggacgtacatgccgaggttccggaagtagttcatgcacaggccgtag840
    ................... ORF 1 ORF 1.............................
    ............................................................
    841cccgactacttcaagcagtccctccccgagggcttcacctgggagcgcaccaccacctac900
    841gggctgatgaagttcgtcagggaggggctcccgaagtggaccctcgcgtggtggtggatg900
    ................... ORF 1 ORF 1.............................
    ............................................................
    901gaggacggcggcttcctgaccgcccaccaggacacctccctggacggcgactgcctggtg960
    901ctcctgccgccgaaggactggcgggtggtcctgtggagggacctgccgctgacggaccac960
    ................... ORF 1 ORF 1.............................
    ............................................................
    961tacaaggtgaagatcctgggcaacaacttccccgccgacggccccgtgatgcagaacaag1020
    961atgttccacttctaggacccgttgttgaaggggcggctgccggggcactacgtcttgttc1020
    ................... ORF 1 ORF 1.............................
    ............................................................
    1021gccggccgctgggagccctccaccgagatcgtgtacgaggtggacggcgtgctgcgcggc1080
    1021cggccggcgaccctcgggaggtggctctagcacatgctccacctgccgcacgacgcgccg1080
    ................... ORF 1 ORF 1.............................
    ............................................................
    1081cagtccctgatggccctggagtgccccggcggtcgccacctgacctgccacctgcacacc1140
    1081gtcagggactaccgggacctcacggggccgccagcggtggactggacggtggacgtgtgg1140
    ................... ORF 1 ORF 1.............................
    ............................................................
    1141acctaccgctccaagaagcccgcctccgccctgaagatgcccggcttccacttcgaggac1200
    1141tggatggcgaggttcttcgggcggaggcgggacttctacgggccgaaggtgaagctcctg1200
    ................... ORF 1 ORF 1.............................
    ............................................................
    1201caccgcatcgagatcctggaggaggtggagaagggcaagtgctacaagcagtacgaggcc1260
    1201gtggcgtagctctaggacctcctccacctcttcccgttcacgatgttcgtcatgctccgg1260
    ................... ORF 1 ORF 1.............................
    ............................................................
    1261gccgtgggccgctactgcgacgccgccccctccaagctgggccacaactccggactcaga1320
    1261cggcacccggcgatgacgctgcggcgggggaggttcgacccggtgttgaggcctgagtct1320
    ................... ORF 1 ORF 1.............................
    XhoI SacI,HindIII EcoRI338) PstI(1347),SalI(1348)
    1321tctcgagctcaagcttcgaattctgcagtcgacggtaccgcgggcccgggatccaccgga1380
    1321agagctcgagttcgaagcttaagacgtcagctgccatggcgcccgggccctaggtggcct1380
    ................... ORF 1 ORF 1.............................
    XbaI(1381) BclI(1391)........................................
    1381tctagataactgatcataatcagccataccacatttgtagaggttttacttgctttaaaa1440
    1381agatctattgactagtattagtcggtatggtgtaaacatctccaaaatgaacgaaatttt1440
    ORF 1 ORF 1......... SV40_PA_term...................
    .................................................. HpaI(1497)
    1441aacctcccacacctccccctgaacctgaaacataaaatgaatgcaattgttgttgttaac1500
    1441ttggagggtgtggagggggacttggactttgtattttacttacgttaacaacaacaattg1500
    ................... SV40_PA_term.............................
    ............................................................
    1501ttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaat1560
    1501aacaaataacgtcgaatattaccaatgtttatttcgttatcgtagtgtttaaagtgttta1560
    ................... SV40_PA_term.............................
    ............................................................
    1561aaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttaa1620
    1561tttcgtaaaaaaagtgacgtaagatcaacaccaaacaggtttgagtagttacatagaatt1620
    .................. SV40_PA_term EBV_rev_pri..................
    ............................................................
    1621cgcgtaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcag1680
    1621gcgcatttaacattcgcaattataaaacaattttaagcgcaatttaaaaacaatttagtc1680
    ............................................................
    ............................................................
    1681ctcattttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagac1740
    1681gagtaaaaaattggttatccggctttagccgttttagggaatatttagttttcttatctg1740
    ............................................................
    ............................................................
    1741cgagatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtgga1800
    1741gctctatcccaactcacaacaaggtcaaaccttgttctcaggtgataatttcttgcacct1800
    .............................. f1_origin....................
    ............................................................
    1801ctccaacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatc1860
    1801gaggttgcagtttcccgctttttggcagatagtcccgctaccgggtgatgcacttggtag1860
    .................... f1_origin..............................
    ............................................................
    1861accctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagg1920
    1861tgggattagttcaaaaaaccccagctccacggcatttcgtgatttagccttgggatttcc1920
    .................... f1_origin..............................
    ............................................................
    1921gagcccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaa1980
    1921ctcgggggctaaatctcgaactgcccctttcggccgcttgcaccgctctttccttccctt1980
    .................... f1_origin..............................
    ............................................................
    1981gaaagcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaac2040
    1981ctttcgctttcctcgcccgcgatcccgcgaccgttcacatcgccagtgcgacgcgcattg2040
    .................... f1_origin..............................
    ............................................................
    2041caccacacccgccgcgcttaatgcgccgctacagggcgcgtcaggtggcacttttcgggg2100
    2041gtggtgtgggcggcgcgaattacgcggcgatgtcccgcgcagtccaccgtgaaaagcccc2100
    .......... f1_origin........................................
    ............................................................
    2101aaatgtgcgcggaacccctatttgtttatttttctaaatacattcaaatatgtatccgct2160
    2101tttacacgcgccttggggataaacaaataaaaagatttatgtaagtttatacataggcga2160
    .................................................. AmpR_pro
    ............................................................
    2161catgagacaataaccctgataaatgcttcaataatattgaaaaaggaagagtcctgaggc2220
    2161gtactctgttattgggactatttacgaagttattataactttttccttctcaggactccg2220
    AmpR_pro..................................................
    ............................................................
    2221ggaaagaaccagctgtggaatgtgtgtcagttagggtgtggaaagtccccaggctcccca2280
    2221cctttcttggtcgacaccttacacacagtcaatcccacacctttcaggggtccgaggggt2280
    ................... pBABE_3_pri..... SV40_enh SV40_pro......
    ............................................................
    2281gcaggcagaagtatgcaaagcatgcatctcaattagtcagcaaccaggtgtggaaagtcc2340
    2281cgtccgtcttcatacgtttcgtacgtagagttaatcagtcgttggtccacacctttcagg2340
    ................ SV40_enh SV40_pro..........................
    ............................................................
    2341ccaggctccccagcaggcagaagtatgcaaagcatgcatctcaattagtcagcaaccata2400
    2341ggtccgaggggtcgtccgtcttcatacgtttcgtacgtagagttaatcagtcgttggtat2400
    ................ SV40_enh SV40_pro..........................
    ............................................................
    2401gtcccgcccctaactccgcccatcccgcccctaactccgcccagttccgcccattctccg2460
    2401cagggcggggattgaggcgggtagggcggggattgaggcgggtcaaggcgggtaagaggc2460
    ................ SV40_enh SV40_pro..... SV40_origin.........
    ............................................................
    2461ccccatggctgactaattttttttatttatgcagaggccgaggccgcctcggcctctgag2520
    2461ggggtaccgactgattaaaaaaaataaatacgtctccggctccggcggagccggagactc2520
    ....... SV40_origin SV40_pro SV40pro_F_pri.................
    .................................................. ClaI(2574)
    2521ctattccagaagtagtgaggaggcttttttggaggcctaggcttttgcaaagatcgatca2580
    2521gataaggtcttcatcactcctccgaaaaaacctccggatccgaaaacgtttctagctagt2580
    ............................................................
    ............................................................
    2581agagacaggatgaggatcgtttcgcatgattgaacaagatggattgcacgcaggttctcc2640
    2581tctctgtcctactcctagcaaagcgtactaacttgttctacctaacgtgcgtccaagagg2640
    ...................................... ORF 2 Neomycin........
    ............................................................
    2641ggccgcttgggtggagaggctattcggctatgactgggcacaacagacaatcggctgctc2700
    2641ccggcgaacccacctctccgataagccgatactgacccgtgttgtctgttagccgacgag2700
    .................. ORF 2 Neomycin............................
    ............................................................
    2701tgatgccgccgtgttccggctgtcagcgcaggggcgcccggttctttttgtcaagaccga2760
    2701actacggcggcacaaggccgacagtcgcgtccccgcgggccaagaaaaacagttctggct2760
    .................. ORF 2 Neomycin............................
    ............................................................
    2761cctgtccggtgccctgaatgaactgcaagacgaggcagcgcggctatcgtggctggccac2820
    2761ggacaggccacgggacttacttgacgttctgctccgtcgcgccgatagcaccgaccggtg2820
    .................. ORF 2 Neomycin............................
    .......... FspI(2836)........................................
    2821gacgggcgttccttgcgcagctgtgctcgacgttgtcactgaagcgggaagggactggct2880
    2821ctgcccgcaaggaacgcgtcgacacgagctgcaacagtgacttcgcccttccctgaccga2880
    .................. ORF 2 Neomycin............................
    ............................................................
    2881gctattgggcgaagtgccggggcaggatctcctgtcatctcaccttgctcctgccgagaa2940
    2881cgataacccgcttcacggccccgtcctagaggacagtagagtggaacgaggacggctctt2940
    .................. ORF 2 Neomycin............................
    ............................................................
    2941agtatccatcatggctgatgcaatgcggcggctgcatacgcttgatccggctacctgccc3000
    2941tcataggtagtaccgactacgttacgccgccgacgtatgcgaactaggccgatggacggg3000
    .................. ORF 2 Neomycin............................
    ............................................................
    3001attcgaccaccaagcgaaacatcgcatcgagcgagcacgtactcggatggaagccggtct3060
    3001taagctggtggttcgctttgtagcgtagctcgctcgtgcatgagcctaccttcggccaga3060
    .................. ORF 2 Neomycin............................
    ............................................................
    3061tgtcgatcaggatgatctggacgaagagcatcaggggctcgcgccagccgaactgttcgc3120
    3061acagctagtcctactagacctgcttctcgtagtccccgagcgcggtcggcttgacaagcg3120
    .................. ORF 2 Neomycin............................
    ............................................................
    3121caggctcaaggcgagcatgcccgacggcgaggatctcgtcgtgacccatggcgatgcctg3180
    3121gtccgagttccgctcgtacgggctgccgctcctagagcagcactgggtaccgctacggac3180
    .................. ORF 2 Neomycin............................
    ............................................................
    3181cttgccgaatatcatggtggaaaatggccgcttttctggattcatcgactgtggccggct3240
    3181gaacggcttatagtaccaccttttaccggcgaaaagacctaagtagctgacaccggccga3240
    .................. ORF 2 Neomycin............................
    ............................................................
    3241gggtgtggcggaccgctatcaggacatagcgttggctacccgtgatattgctgaagagct3300
    3241cccacaccgcctggcgatagtcctgtatcgcaaccgatgggcactataacgacttctcga3300
    .................. ORF 2 Neomycin............................
    ............................................................
    3301tggcggcgaatgggctgaccgcttcctcgtgctttacggtatcgccgctcccgattcgca3360
    3301accgccgcttacccgactggcgaaggagcacgaaatgccatagcggcgagggctaagcgt3360
    .................. ORF 2 Neomycin............................
    ............................................................
    3361gcgcatcgccttctatcgccttcttgacgagttcttctgagcgggactctggggttcgaa3420
    3361cgcgtagcggaagatagcggaagaactgctcaagaagactcgccctgagaccccaagctt3420
    ........ ORF 2 Neomycin......................................
    ............................................................
    3421atgaccgaccaagcgacgcccaacctgccatcacgagatttcgattccaccgccgccttc3480
    3421tactggctggttcgctgcgggttggacggtagtgctctaaagctaaggtggcggcggaag3480
    ............................................................
    ............................................................
    3481tatgaaaggttgggcttcggaatcgttttccgggacgccggctggatgatcctccagcgc3540
    3481atactttccaacccgaagccttagcaaaaggccctgcggccgacctactaggaggtcgcg3540
    ............................................................
    ............................................................
    3541ggggatctcatgctggagttcttcgcccaccctagggggaggctaactgaaacacggaag3600
    3541cccctagagtacgacctcaagaagcgggtgggatccccctccgattgactttgtgccttc3600
    ........................................ TK_PA_term..........
    ............................................................
    3601gagacaataccggaaggaacccgcgctatgacggcaataaaaagacagaataaaacgcac3660
    3601ctctgttatggccttccttgggcgcgatactgccgttatttttctgtcttattttgcgtg3660
    .................... TK_PA_term..............................
    ............................................................
    3661ggtgttgggtcgtttgttcataaacgcggggttcggtcccagggctggcactctgtcgat3720
    3661ccacaacccagcaaacaagtatttgcgccccaagccagggtcccgaccgtgagacagcta3720
    .................... TK_PA_term..............................
    ............................................................
    3721accccaccgagaccccattggggccaatacgcccgcgtttcttccttttccccaccccac3780
    3721tggggtggctctggggtaaccccggttatgcgggcgcaaagaaggaaaaggggtggggtg3780
    .................... TK_PA_term..............................
    ............................................................
    3781cccccaagttcgggtgaaggcccagggctcgcagccaacgtcggggcggcaggccctgcc3840
    3781gggggttcaagcccacttccgggtcccgagcgtcggttgcagccccgccgtccgggacgg3840
    .................... TK_PA_term..............................
    ............................................................
    3841atagcctcaggttactcatatatactttagattgatttaaaacttcatttttaatttaaa3900
    3841tatcggagtccaatgagtatatatgaaatctaactaaattttgaagtaaaaattaaattt3900
    ............................................................
    ............................................................
    3901aggatctaggtgaagatcctttttgataatctcatgaccaaaatcccttaacgtgagttt3960
    3901tcctagatccacttctaggaaaaactattagagtactggttttagggaattgcactcaaa3960
    ............................................................
    ............................................................
    3961tcgttccactgagcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcctttt4020
    3961agcaaggtgactcgcagtctggggcatcttttctagtttcctagaagaactctaggaaaa4020
    ...................................... pBR322_origin........
    ............................................................
    4021tttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgctaccagcggtggtttgt4080
    4021aaagacgcgcattagacgacgaacgtttgtttttttggtggcgatggtcgccaccaaaca4080
    .................. pBR322_origin............................
    ............................................................
    4081ttgccggatcaagagctaccaactctttttccgaaggtaactggcttcagcagagcgcag4140
    4081aacggcctagttctcgatggttgagaaaaaggcttccattgaccgaagtcgtctcgcgtc4140
    .................. pBR322_origin............................
    ............................................................
    4141ataccaaatactgtccttctagtgtagccgtagttaggccaccacttcaagaactctgta4200
    4141tatggtttatgacaggaagatcacatcggcatcaatccggtggtgaagttcttgagacat4200
    .................. pBR322_origin............................
    ............................................................
    4201gcaccgcctacatacctcgctctgctaatcctgttaccagtggctgctgccagtggcgat4260
    4201cgtggcggatgtatggagcgagacgattaggacaatggtcaccgacgacggtcaccgcta4260
    .................. pBR322_origin............................
    ............................................................
    4261aagtcgtgtcttaccgggttggactcaagacgatagttaccggataaggcgcagcggtcg4320
    4261ttcagcacagaatggcccaacctgagttctgctatcaatggcctattccgcgtcgccagc4320
    .................. pBR322_origin............................
    ............................................................
    4321ggctgaacggggggttcgtgcacacagcccagcttggagcgaacgacctacaccgaactg4380
    4321ccgacttgccccccaagcacgtgtgtcgggtcgaacctcgcttgctggatgtggcttgac4380
    .................. pBR322_origin............................
    ............................................................
    4381agatacctacagcgtgagctatgagaaagcgccacgcttcccgaagggagaaaggcggac4440
    4381tctatggatgtcgcactcgatactctttcgcggtgcgaagggcttccctctttccgcctg4440
    .................. pBR322_origin............................
    ............................................................
    4441aggtatccggtaagcggcagggtcggaacaggagagcgcacgagggagcttccaggggga4500
    4441tccataggccattcgccgtcccagccttgtcctctcgcgtgctccctcgaaggtccccct4500
    .................. pBR322_origin............................
    ............................................................
    4501aacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttgagcgtcgattt4560
    4501ttgcggaccatagaaatatcaggacagcccaaagcggtggagactgaactcgcagctaaa4560
    .................. pBR322_origin............................
    ............................................................
    4561ttgtgatgctcgtcaggggggcggagcctatggaaaaacgccagcaacgcggccttttta4620
    4561aacactacgagcagtccccccgcctcggatacctttttgcggtcgttgcgccggaaaaat4620
    .................. pBR322_origin............................
    ............................................................
    4621cggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgat4680
    4621gccaaggaccggaaaacgaccggaaaacgagtgtacaagaaaggacgcaataggggacta4680
    ............................................................
    ............................................................
    4681tctgtggataaccgtattaccgccatgcat..............................4710
    4681agacacctattggcataatggcggtacgta..............................4710
    ............................................................

    References



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