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Sequence of pCAT3-Enhancer
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Sequence of pCAT3-Enhancer
: 4273 BP; 1073 A; 1034 C; 1035 G; 1131 T; 0 other; |
| KpnI(5) | SacI(11) | NheI(21) | .......... | .......... | .......... |
| 1 | ggtaccgagc | tcttacgcgt | gctagcccgg | gctcgagatc | tgcgatctaa | gtaagcttgc | 60 |
| 1 | ccatggctcg | agaatgcgca | cgatcgggcc | cgagctctag | acgctagatt | cattcgaacg | 60 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | PstI(75) | .......... | .......... | .......... | .......... |
| 61 | ggccgcttaa | ctgcagaagt | tggtcgtgag | gcactgggca | ggtaagtatc | aaggttacaa | 120 |
| 61 | ccggcgaatt | gacgtcttca | accagcactc | cgtgacccgt | ccattcatag | ttccaatgtt | 120 |
| .......... | .......... | .......... | .......... | .......... | chim_int |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 121 | gacaggttta | aggagaccaa | tagaaactgg | gcttgtcgag | acagagaaga | ctcttgcgtt | 180 |
| 121 | ctgtccaaat | tcctctggtt | atctttgacc | cgaacagctc | tgtctcttct | gagaacgcaa | 180 |
| .......... | .......... | chim_int | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 181 | tctgataggc | acctattggt | cttactgaca | tccactttgc | ctttctctcc | acaggtgtcc | 240 |
| 181 | agactatccg | tggataacca | gaatgactgt | aggtgaaacg | gaaagagagg | tgtccacagg | 240 |
| .......... | .......... | chim_int | .......... | .......... | .......... |
| .......... | .......... | AflII(263) | .......... | .......... | .......... |
| 241 | actcccaggt | tcaattacag | ctcttaagcg | gccgcaagct | tgccgccacc | atggagaaaa | 300 |
| 241 | tgagggtcca | agttaatgtc | gagaattcgc | cggcgttcga | acggcggtgg | tacctctttt | 300 |
| .......... | .......... | .......... | .......... | ........ | ORF 3 CAT/CamR |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 301 | aaatcactgg | atataccacc | gttgatatat | cccaatggca | tcgtaaagaa |
cattttgagg | 360 |
| 301 | tttagtgacc | tatatggtgg | caactatata | gggttaccgt | agcatttctt | gtaaaactcc | 360 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | PvuII(404) | .......... |
| 361 | catttcagtc | agttgctcaa | tgtacctata | accagaccgt | tcagctggat |
attacggcct | 420 |
| 361 | gtaaagtcag | tcaacgagtt | acatggatat | tggtctggca | agtcgaccta | taatgccgga | 420 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 421 | ttttaaagac | cgtaaagaaa | aataagcaca | agttttatcc | ggcctttatt |
cacattcttg | 480 |
| 421 | aaaatttctg | gcatttcttt | ttattcgtgt | tcaaaatagg | ccggaaataa | gtgtaagaac | 480 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 481 | cccgcctgat | gaatgctcat | ccggaactcc | gtatggcaat | gaaagacggt |
gagctggtga | 540 |
| 481 | gggcggacta | cttacgagta | ggccttgagg | cataccgtta | ctttctgcca | ctcgaccact | 540 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 541 | tatgggatag | tgttcaccct | tgttacaccg | ttttccatga | gcaaactgaa |
acgttttcat | 600 |
| 541 | ataccctatc | acaagtggga | acaatgtggc | aaaaggtact | cgtttgactt | tgcaaaagta | 600 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 601 | cgctctggag | tgaataccac | gacgatttcc | ggcagtttct | acacatatat |
tcgcaagatg | 660 |
| 601 | gcgagacctc | acttatggtg | ctgctaaagg | ccgtcaaaga | tgtgtatata | agcgttctac | 660 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 661 | tggcgtgtta | cggtgaaaac | ctggcctatt | tccctaaagg | gtttattgag |
aatatgtttt | 720 |
| 661 | accgcacaat | gccacttttg | gaccggataa | agggatttcc | caaataactc | ttatacaaaa | 720 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | MscI(771) |
| 721 | tcgtctcagc | caatccctgg | gtgagtttca | ccagttttga | tttaaacgtg |
gccaatatgg | 780 |
| 721 | agcagagtcg | gttagggacc | cactcaaagt | ggtcaaaact | aaatttgcac | cggttatacc | 780 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 781 | acaacttctt | cgcccccgtt | ttcacgatgg | gcaaatatta | tacgcaaggc |
gacaaggtgc | 840 |
| 781 | tgttgaagaa | gcgggggcaa | aagtgctacc | cgtttataat | atgcgttccg | ctgttccacg | 840 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 841 | tgatgccgct | ggcgattcag | gttcatcatg | ccgtttgtga | tggcttccat |
gtcggcagaa | 900 |
| 841 | actacggcga | ccgctaagtc | caagtagtac | ggcaaacact | accgaaggta | cagccgtctt | 900 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | XbaI(951) |
| 901 | tgcttaatga | attacaacag | tactgcgatg | agtggcaggg | cggggcgtaa |
tctagagtcg | 960 |
| 901 | acgaattact | taatgttgtc | atgacgctac | tcaccgtccc | gccccgcatt | agatctcagc | 960 |
| .......... | ........ | ORF 3 CAT/CamR | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 961 | gggcggccgg | ccgcttcgag | cagacatgat | aagatacatt | gatgagtttg | gacaaaccac | 1020 |
| 961 | cccgccggcc | ggcgaagctc | gtctgtacta | ttctatgtaa | ctactcaaac | ctgtttggtg | 1020 |
| .......... | .......... | .......... | ... | SV40_PA_term EBV_rev_pri | ... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1021 | aactagaatg | cagtgaaaaa | aatgctttat | ttgtgaaatt | tgtgatgcta | ttgctttatt | 1080 |
| 1021 | ttgatcttac | gtcacttttt | ttacgaaata | aacactttaa | acactacgat | aacgaaataa | 1080 |
| .......... | ......... | SV40_PA_term | ......... | .......... | .......... |
| .......... | .......... | .......... | HpaI(1111) | .......... | .......... |
| 1081 | tgtaaccatt | ataagctgca | ataaacaagt | taacaacaac | aattgcattc | attttatgtt | 1140 |
| 1081 | acattggtaa | tattcgacgt | tatttgttca | attgttgttg | ttaacgtaag | taaaatacaa | 1140 |
| ......... | SV40_PA_term | ......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1141 | tcaggttcag | ggggaggtgt | gggaggtttt | ttaaagcaag | taaaacctct | acaaatgtgg | 1200 |
| 1141 | agtccaagtc | cccctccaca | ccctccaaaa | aatttcgttc | attttggaga | tgtttacacc | 1200 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1201 | taaaatcgat | aaggatctga | acgatggagc | ggagaatggg | cggaactggg | cggagttagg | 1260 |
| 1201 | attttagcta | ttcctagact | tgctacctcg | cctcttaccc | gccttgaccc | gcctcaatcc | 1260 |
| .......... | .......... | .......... | .......... | SV40_enh | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1261 | ggcgggatgg | gcggagttag | gggcgggact | atggttgctg | actaattgag | atgcatgctt | 1320 |
| 1261 | ccgccctacc | cgcctcaatc | cccgccctga | taccaacgac | tgattaactc | tacgtacgaa | 1320 |
| .......... | .......... | SV40_enh | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1321 | tgcatacttc | tgcctgctgg | ggagcctggg | gactttccac | acctggttgc | tgactaattg | 1380 |
| 1321 | acgtatgaag | acggacgacc | cctcggaccc | ctgaaaggtg | tggaccaacg | actgattaac | 1380 |
| .......... | .......... | SV40_enh | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1381 | agatgcatgc | tttgcatact | tctgcctgct | ggggagcctg | gggactttcc | acaccctaac | 1440 |
| 1381 | tctacgtacg | aaacgtatga | agacggacga | cccctcggac | ccctgaaagg | tgtgggattg | 1440 |
| .......... | .......... | SV40_enh | .......... | .......... | .......... |
| ......... | BamHI(1459) | SalI(1465) | ......... | .......... | .......... |
| 1441 | tgacacacat | tccacagcgg | atccgtcgac | cgatgccctt | gagagccttc | aacccagtca | 1500 |
| 1441 | actgtgtgta | aggtgtcgcc | taggcagctg | gctacgggaa | ctctcggaag | ttgggtcagt | 1500 |
| SV40_enh pBABE_3_pri | | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1501 | gctccttccg | gtgggcgcgg | ggcatgacta | tcgtcgccgc | acttatgact | gtcttcttta | 1560 |
| 1501 | cgaggaaggc | cacccgcgcc | ccgtactgat | agcagcggcg | tgaatactga | cagaagaaat | 1560 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1561 | tcatgcaact | cgtaggacag | gtgccggcag | cgctcttccg | cttcctcgct | cactgactcg | 1620 |
| 1561 | agtacgttga | gcatcctgtc | cacggccgtc | gcgagaaggc | gaaggagcga | gtgactgagc | 1620 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1621 | ctgcgctcgg | tcgttcggct | gcggcgagcg | gtatcagctc | actcaaaggc | ggtaatacgg | 1680 |
| 1621 | gacgcgagcc | agcaagccga | cgccgctcgc | catagtcgag | tgagtttccg | ccattatgcc | 1680 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1681 | ttatccacag | aatcagggga | taacgcagga | aagaacatgt | gagcaaaagg | ccagcaaaag | 1740 |
| 1681 | aataggtgtc | ttagtcccct | attgcgtcct | ttcttgtaca | ctcgttttcc | ggtcgttttc | 1740 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1741 | gccaggaacc | gtaaaaaggc | cgcgttgctg | gcgtttttcc | ataggctccg | cccccctgac | 1800 |
| 1741 | cggtccttgg | catttttccg | gcgcaacgac | cgcaaaaagg | tatccgaggc | ggggggactg | 1800 |
| .......... | .......... | ........ | pBR322_origin | ........ | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1801 | gagcatcaca | aaaatcgacg | ctcaagtcag | aggtggcgaa | acccgacagg | actataaaga | 1860 |
| 1801 | ctcgtagtgt | ttttagctgc | gagttcagtc | tccaccgctt | tgggctgtcc | tgatatttct | 1860 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1861 | taccaggcgt | ttccccctgg | aagctccctc | gtgcgctctc | ctgttccgac | cctgccgctt | 1920 |
| 1861 | atggtccgca | aagggggacc | ttcgagggag | cacgcgagag | gacaaggctg | ggacggcgaa | 1920 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1921 | accggatacc | tgtccgcctt | tctcccttcg | ggaagcgtgg | cgctttctca | tagctcacgc | 1980 |
| 1921 | tggcctatgg | acaggcggaa | agagggaagc | ccttcgcacc | gcgaaagagt | atcgagtgcg | 1980 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1981 | tgtaggtatc | tcagttcggt | gtaggtcgtt | cgctccaagc | tgggctgtgt | gcacgaaccc | 2040 |
| 1981 | acatccatag | agtcaagcca | catccagcaa | gcgaggttcg | acccgacaca | cgtgcttggg | 2040 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2041 | cccgttcagc | ccgaccgctg | cgccttatcc | ggtaactatc | gtcttgagtc | caacccggta | 2100 |
| 2041 | gggcaagtcg | ggctggcgac | gcggaatagg | ccattgatag | cagaactcag | gttgggccat | 2100 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2101 | agacacgact | tatcgccact | ggcagcagcc | actggtaaca | ggattagcag | agcgaggtat | 2160 |
| 2101 | tctgtgctga | atagcggtga | ccgtcgtcgg | tgaccattgt | cctaatcgtc | tcgctccata | 2160 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2161 | gtaggcggtg | ctacagagtt | cttgaagtgg | tggcctaact | acggctacac | tagaagaaca | 2220 |
| 2161 | catccgccac | gatgtctcaa | gaacttcacc | accggattga | tgccgatgtg | atcttcttgt | 2220 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2221 | gtatttggta | tctgcgctct | gctgaagcca | gttaccttcg | gaaaaagagt | tggtagctct | 2280 |
| 2221 | cataaaccat | agacgcgaga | cgacttcggt | caatggaagc | ctttttctca | accatcgaga | 2280 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2281 | tgatccggca | aacaaaccac | cgctggtagc | ggtggttttt | ttgtttgcaa | gcagcagatt | 2340 |
| 2281 | actaggccgt | ttgtttggtg | gcgaccatcg | ccaccaaaaa | aacaaacgtt | cgtcgtctaa | 2340 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2341 | acgcgcagaa | aaaaaggatc | tcaagaagat | cctttgatct | tttctacggg | gtctgacgct | 2400 |
| 2341 | tgcgcgtctt | tttttcctag | agttcttcta | ggaaactaga | aaagatgccc | cagactgcga | 2400 |
| ........ | pBR322_origin | ........ | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2401 | cagtggaacg | aaaactcacg | ttaagggatt | ttggtcatga | gattatcaaa | aaggatcttc | 2460 |
| 2401 | gtcaccttgc | ttttgagtgc | aattccctaa | aaccagtact | ctaatagttt | ttcctagaag | 2460 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2461 | acctagatcc | ttttaaatta | aaaatgaagt | tttaaatcaa | tctaaagtat | atatgagtaa | 2520 |
| 2461 | tggatctagg | aaaatttaat | ttttacttca | aaatttagtt | agatttcata | tatactcatt | 2520 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2521 | acttggtctg | acagttacca | atgcttaatc | agtgaggcac | ctatctcagc | gatctgtcta | 2580 |
| 2521 | tgaaccagac | tgtcaatggt | tacgaattag | tcactccgtg | gatagagtcg | ctagacagat | 2580 |
| .......... | .......... | ....... | ORF 3 Ampicillin | ....... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2581 | tttcgttcat | ccatagttgc | ctgactcccc | gtcgtgtaga | taactacgat | acgggagggc | 2640 |
| 2581 | aaagcaagta | ggtatcaacg | gactgagggg | cagcacatct | attgatgcta | tgccctcccg | 2640 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2641 | ttaccatctg | gccccagtgc | tgcaatgata | ccgcgagacc | cacgctcacc | ggctccagat | 2700 |
| 2641 | aatggtagac | cggggtcacg | acgttactat | ggcgctctgg | gtgcgagtgg | ccgaggtcta | 2700 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2701 | ttatcagcaa | taaaccagcc | agccggaagg | gccgagcgca | gaagtggtcc | tgcaacttta | 2760 |
| 2701 | aatagtcgtt | atttggtcgg | tcggccttcc | cggctcgcgt | cttcaccagg | acgttgaaat | 2760 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | AseI(2780) | .......... | .......... | .......... | .......... |
| 2761 | tccgcctcca | tccagtctat | taattgttgc | cgggaagcta | gagtaagtag | ttcgccagtt | 2820 |
| 2761 | aggcggaggt | aggtcagata | attaacaacg | gcccttcgat | ctcattcatc | aagcggtcaa | 2820 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2821 | aatagtttgc | gcaacgttgt | tgccattgct | acaggcatcg | tggtgtcacg | ctcgtcgttt | 2880 |
| 2821 | ttatcaaacg | cgttgcaaca | acggtaacga | tgtccgtagc | accacagtgc | gagcagcaaa | 2880 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2881 | ggtatggctt | cattcagctc | cggttcccaa | cgatcaaggc | gagttacatg | atcccccatg | 2940 |
| 2881 | ccataccgaa | gtaagtcgag | gccaagggtt | gctagttccg | ctcaatgtac | tagggggtac | 2940 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2941 | ttgtgcaaaa | aagcggttag | ctccttcggt | cctccgatcg | ttgtcagaag | taagttggcc | 3000 |
| 2941 | aacacgtttt | ttcgccaatc | gaggaagcca | ggaggctagc | aacagtcttc | attcaaccgg | 3000 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3001 | gcagtgttat | cactcatggt | tatggcagca | ctgcataatt | ctcttactgt | catgccatcc | 3060 |
| 3001 | cgtcacaata | gtgagtacca | ataccgtcgt | gacgtattaa | gagaatgaca | gtacggtagg | 3060 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3061 | gtaagatgct | tttctgtgac | tggtgagtac | tcaaccaagt | cattctgaga | atagtgtatg | 3120 |
| 3061 | cattctacga | aaagacactg | accactcatg | agttggttca | gtaagactct | tatcacatac | 3120 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3121 | cggcgaccga | gttgctcttg | cccggcgtca | atacgggata | ataccgcgcc | acatagcaga | 3180 |
| 3121 | gccgctggct | caacgagaac | gggccgcagt | tatgccctat | tatggcgcgg | tgtatcgtct | 3180 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3181 | actttaaaag | tgctcatcat | tggaaaacgt | tcttcggggc | gaaaactctc | aaggatctta | 3240 |
| 3181 | tgaaattttc | acgagtagta | accttttgca | agaagccccg | cttttgagag | ttcctagaat | 3240 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3241 | ccgctgttga | gatccagttc | gatgtaaccc | actcgtgcac | ccaactgatc | ttcagcatct | 3300 |
| 3241 | ggcgacaact | ctaggtcaag | ctacattggg | tgagcacgtg | ggttgactag | aagtcgtaga | 3300 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3301 | tttactttca | ccagcgtttc | tgggtgagca | aaaacaggaa | ggcaaaatgc | cgcaaaaaag | 3360 |
| 3301 | aaatgaaagt | ggtcgcaaag | acccactcgt | ttttgtcctt | ccgttttacg | gcgttttttc | 3360 |
| .......... | ....... | ORF 3 Ampicillin | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3361 | ggaataaggg | cgacacggaa | atgttgaata | ctcatactct | tcctttttca | atattattga | 3420 |
| 3361 | ccttattccc | gctgtgcctt | tacaacttat | gagtatgaga | aggaaaaagt | tataataact | 3420 |
| ....... | ORF 3 Ampicillin | ....... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3421 | agcatttatc | agggttattg | tctcatgagc | ggatacatat | ttgaatgtat | ttagaaaaat | 3480 |
| 3421 | tcgtaaatag | tcccaataac | agagtactcg | cctatgtata | aacttacata | aatcttttta | 3480 |
| .......... | .......... | .......... | AmpR_pro | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3481 | aaacaaatag | gggttccgcg | cacatttccc | cgaaaagtgc | cacctgacgc | gccctgtagc | 3540 |
| 3481 | tttgtttatc | cccaaggcgc | gtgtaaaggg | gcttttcacg | gtggactgcg | cgggacatcg | 3540 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3541 | ggcgcattaa | gcgcggcggg | tgtggtggtt | acgcgcagcg | tgaccgctac | acttgccagc | 3600 |
| 3541 | ccgcgtaatt | cgcgccgccc | acaccaccaa | tgcgcgtcgc | actggcgatg | tgaacggtcg | 3600 |
| .......... | .......... | .......... | f1_origin | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3601 | gccctagcgc | ccgctccttt | cgctttcttc | ccttcctttc | tcgccacgtt | cgccggcttt | 3660 |
| 3601 | cgggatcgcg | ggcgaggaaa | gcgaaagaag | ggaaggaaag | agcggtgcaa | gcggccgaaa | 3660 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3661 | ccccgtcaag | ctctaaatcg | ggggctccct | ttagggttcc | gatttagtgc | tttacggcac | 3720 |
| 3661 | ggggcagttc | gagatttagc | ccccgaggga | aatcccaagg | ctaaatcacg | aaatgccgtg | 3720 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3721 | ctcgacccca | aaaaacttga | ttagggtgat | ggttcacgta | gtgggccatc | gccctgatag | 3780 |
| 3721 | gagctggggt | tttttgaact | aatcccacta | ccaagtgcat | cacccggtag | cgggactatc | 3780 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3781 | acggtttttc | gccctttgac | gttggagtcc | acgttcttta | atagtggact | cttgttccaa | 3840 |
| 3781 | tgccaaaaag | cgggaaactg | caacctcagg | tgcaagaaat | tatcacctga | gaacaaggtt | 3840 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3841 | actggaacaa | cactcaaccc | tatctcggtc | tattcttttg | atttataagg | gattttgccg | 3900 |
| 3841 | tgaccttgtt | gtgagttggg | atagagccag | ataagaaaac | taaatattcc | ctaaaacggc | 3900 |
| f1_origin | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3901 | atttcggcct | attggttaaa | aaatgagctg | atttaacaaa | aatttaacgc | gaattttaac | 3960 |
| 3901 | taaagccgga | taaccaattt | tttactcgac | taaattgttt | ttaaattgcg | cttaaaattg | 3960 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3961 | aaaatattaa | cgcttacaat | ttgccattcg | ccattcaggc | tgcgcaactg | ttgggaaggg | 4020 |
| 3961 | ttttataatt | gcgaatgtta | aacggtaagc | ggtaagtccg | acgcgttgac | aacccttccc | 4020 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4021 | cgatcggtgc | gggcctcttc | gctattacgc | cagcccaagc | taccatgata | agtaagtaat | 4080 |
| 4021 | gctagccacg | cccggagaag | cgataatgcg | gtcgggttcg | atggtactat | tcattcatta | 4080 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4081 | attaaggtac | gggaggtact | tggagcggcc | gcaataaaat | atctttattt | tcattacatc | 4140 |
| 4081 | taattccatg | ccctccatga | acctcgccgg | cgttatttta | tagaaataaa | agtaatgtag | 4140 |
| .......... | .......... | .......... | . | synth_PA_term TB up_PA_term | . |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4141 | tgtgtgttgg | ttttttgtgt | gaatcgatag | tactaacata | cgctctccat | caaaacaaaa | 4200 |
| 4141 | acacacaacc | aaaaaacaca | cttagctatc | atgattgtat | gcgagaggta | gttttgtttt | 4200 |
| ...... | synth_PA_term | TB up_PA_term | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4201 | cgaaacaaaa | caaactagca | aaataggctg | tccccagtgc | aagtgcaggt | gccagaacat | 4260 |
| 4201 | gctttgtttt | gtttgatcgt | tttatccgac | aggggtcacg | ttcacgtcca | cggtcttgta | 4260 |
| .......... | ... | TB up_PA_term RVpri3_pri | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4261 | ttctctatcg | ata....... | .......... | .......... | .......... | .......... | 4273 |
| 4261 | aagagatagc | tat....... | .......... | .......... | .......... | .......... | 4273 |
| .......... | .......... | .......... | .......... | .......... | .......... |
References
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