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  • BVTech Plasmid

    This sequnce graph is created using BVTech Plasmid, which is DNA sequence analysis and plasmid drawing software for Windows PCs.You can use it to plan your DNA cloning, draw high quality plasmid maps, analyse your DNA sequencing data, align sequences, and much more.

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    Sequence of pGH8

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    Sequence of pGH8 - pRAB-3::mCherry::unc-54utr : 5340 BP; 1544 A; 1115 C; 1117 G; 1564 T; 0 other;

    ............................................................
    1gtatagaaaagttgatcttcagatgggagcagtggactgtctatttgatattcttaaaat60
    1catatcttttcaactagaagtctaccctcgtcacctgacagataaactataagaatttta60
    ............................................................
    ............................................................
    61gtactctataaaagatgaaactgtaatgaccaattccctacataaatatttttaactaat120
    61catgagatattttctactttgacattactggttaagggatgtatttataaaaattgatta120
    ............................................................
    ............................................................
    121tggtcggatatttggggatcagagaagtacttgtttttgcgatattaataatgatatatt180
    121accagcctataaacccctagtctcttcatgaacaaaaacgctataattattactatataa180
    ............................................................
    ............................................................
    181tttctagtaaaaaaatgttaagcgatttgtgaataattaagttggcttgaaaaagatttt240
    181aaagatcatttttttacaattcgctaaacacttattaattcaaccgaactttttctaaaa240
    ............................................................
    ............................................................
    241ttgatagctatgtattttgttaatttaaatcagattttaaaactttattattgactattt300
    241aactatcgatacataaaacaattaaatttagtctaaaattttgaaataataactgataaa300
    ............................................................
    ............................................................
    301atatatattatatattatatattttcatggtttaatcaaaatctattaaattatttctaa360
    301tatatataatatataatatataaaagtaccaaattagttttagataatttaataaagatt360
    ............................................................
    ............................................................
    361aatctctaaatatcgaattctctaaaaagcttcatcaacaaaagcatttcaattatctaa420
    361ttagagatttatagcttaagagatttttcgaagtagttgttttcgtaaagttaatagatt420
    ............................................................
    ............................................................
    421cacaatgagaataattcaagaactgaaatagaaagaaatctagaaaaaaaagagagtgag480
    421gtgttactcttattaagttcttgactttatctttctttagatcttttttttctctcactc480
    ............................................................
    ............................................................
    481gtgccctattaaatcggtgctctcctctctaacagaagcgcctacacgcacccaagagag540
    481cacgggataatttagccacgagaggagagattgtcttcgcggatgtgcgtgggttctctc540
    ............................................................
    ............................................................
    541ctctttttctttcttttttcggagcacacatacacgcatacactcctcagaagtgtatag600
    541gagaaaaagaaagaaaaaagcctcgtgtgtatgtgcgtatgtgaggagtcttcacatatc600
    ............................................................
    ............................................................
    601agaaaatgggagaagaagcgaaagaagacgaagaagcggttgtgatgtatgcatcgggcg660
    601tcttttaccctcttcttcgctttcttctgcttcttcgccaacactacatacgtagcccgc660
    ............................................................
    .............................. ClaI(700)....................
    661tttctatctctctccgtgagcaacgagctagtcaacccatcgatccatttttgtgagcac720
    661aaagatagagagaggcactcgttgctcgatcagttgggtagctaggtaaaaacactcgtg720
    ............................................................
    ............................................................
    721acacagagagagactcaaacacactcacagcttcacactgagctccaagagctctgtaga780
    721tgtgtctctctctgagtttgtgtgagtgtcgaagtgtgactcgaggttctcgagacatct780
    ............................................................
    ............................................................
    781gagaagccagagtatgctttcctcgattttcctaacgtcttcttcttctgcttttttctt840
    781ctcttcggtctcatacgaaaggagctaaaaggattgcagaagaagaagacgaaaaaagaa840
    ............................................................
    ............................................................
    841tttcccaacgagttgtagtccactaacttcaatttttcctccagagaaagagttttagag900
    841aaagggttgctcaacatcaggtgattgaagttaaaaaggaggtctctttctcaaaatctc900
    ............................................................
    ............................................................
    901agacagctgataaatacactagagaaataaaaagaatgataaaaatttgctattttaatc960
    901tctgtcgactatttatgtgatctctttatttttcttactatttttaaacgataaaattag960
    ............................................................
    ............................................................
    961agttccctctcgtttctctaagttttgttgttgggttgggaaattaaaattggaaaatgg1020
    961tcaagggagagcaaagagattcaaaacaacaacccaaccctttaattttaaccttttacc1020
    ............................................................
    ............................................................
    1021aaataacgtttttttctgtctaatcttgaattctccagacatttcttatttccttttttg1080
    1021tttattgcaaaaaaagacagattagaacttaagaggtctgtaaagaataaaggaaaaaac1080
    ............................................................
    ............................................................
    1081ttgcaagtttttcttccttctctaatttttaatcaaagatatctcgctatgaactttgaa1140
    1081aacgttcaaaaagaaggaagagattaaaaattagtttctatagagcgatacttgaaactt1140
    ............................................................
    ............................................................
    1141tttttgatattttgattctataaatacataaagtaatctaaatgctcttttaaaataaat1200
    1141aaaaactataaaactaagatatttatgtatttcattagatttacgagaaaattttattta1200
    ............................................................
    ............................................................
    1201ctacagtagccctattttcagatgacaagtttgtacaaaaaagcaggcttaatggtctca1260
    1201gatgtcatcgggataaaagtctactgttcaaacatgttttttcgtccgaattaccagagt1260
    .............................. attB1 ORF 1..........
    ............................................................
    1261aagggtgaagaagataacatggcaattattaaagagtttatgcgtttcaaggtgcatatg1320
    1261ttcccacttcttctattgtaccgttaataatttctcaaatacgcaaagttccacgtatac1320
    .................... ORF 1..............................
    ............................................................
    1321gagggatctgtcaatgggcatgagtttgaaattgaaggtgaaggagaaggccgaccatat1380
    1321ctccctagacagttacccgtactcaaactttaacttccacttcctcttccggctggtata1380
    .................... ORF 1..............................
    ............................................................
    1381gagggaacacaaaccgcaaaactaaaggtaagtttaaacatatatatactaactaaccct1440
    1381ctcccttgtgtttggcgttttgatttccattcaaatttgtatatatatgattgattggga1440
    .................... ORF 1..............................
    ............................................................
    1441gattatttaaattttcaggtaactaaaggcggaccattaccattcgcctgggacatcctc1500
    1441ctaataaatttaaaagtccattgatttccgcctggtaatggtaagcggaccctgtaggag1500
    .................... ORF 1..............................
    ............................................................
    1501tctccacagttcatgtatggaagtaaagcttatgttaaacatccggcagatataccagat1560
    1501agaggtgtcaagtacataccttcatttcgaatacaatttgtaggccgtctatatggtcta1560
    .................... ORF 1..............................
    ............................................................
    1561tatttgaaactttcattcccggagggttttaagtgggaacgcgtaatgaattttgaagac1620
    1561ataaactttgaaagtaagggcctcccaaaattcacccttgcgcattacttaaaacttctg1620
    .................... ORF 1..............................
    ............................................................
    1621ggaggagttgttacagtgacgcaagactcaaggtaagtttaaacagttcggtactaacta1680
    1621cctcctcaacaatgtcactgcgttctgagttccattcaaatttgtcaagccatgattgat1680
    .................... ORF 1..............................
    ............................................................
    1681accatacatatttaaattttcagcctccaagatggagaatttatttataaagtcaaactt1740
    1681tggtatgtataaatttaaaagtcggaggttctacctcttaaataaatatttcagtttgaa1740
    .................... ORF 1..............................
    ............................................................
    1741cgaggaacgaatttcccctcggatggacctgttatgcagaagaagactatgggatgggaa1800
    1741gctccttgcttaaaggggagcctacctggacaatacgtcttcttctgataccctaccctt1800
    .................... ORF 1..............................
    ............................. AflII(1837)...................
    1801gcttcaagtgaaagaatgtaccctgaagacggtgctcttaagggagagattaaacaacgt1860
    1801cgaagttcactttcttacatgggacttctgccacgagaattccctctctaatttgttgca1860
    .................... ORF 1..............................
    ............................................................
    1861cttaaattgaaagatggaggacattacgatgctgaggtaagtttaaacatgattttacta1920
    1861gaatttaactttctacctcctgtaatgctacgactccattcaaatttgtactaaaatgat1920
    .................... ORF 1..............................
    ............................................................
    1921actaactaatctgatttaaattttcaggtgaagacaacttacaaagccaaaaaaccagtt1980
    1921tgattgattagactaaatttaaaagtccacttctgttgaatgtttcggttttttggtcaa1980
    .................... ORF 1..............................
    ............................................................
    1981cagctgccaggagcgtacaatgttaatattaaactggatatcacctcccacaacgaggat2040
    1981gtcgacggtcctcgcatgttacaattataatttgacctatagtggagggtgttgctccta2040
    .................... ORF 1..............................
    ............................................................
    2041tacactatcgttgagcaatatgaaagagctgaagggcggcactcgacaggtggcatggat2100
    2041atgtgatagcaactcgttatactttctcgacttcccgccgtgagctgtccaccgtaccta2100
    .................... ORF 1..............................
    .................................................. EagI(2160)
    2101gaattgtataagtagtacccagctttcttgtacaaagtggtgatatctgagctccgcatc2160
    2101cttaacatattcatcatgggtcgaaagaacatgtttcaccactatagactcgaggcgtag2160
    ORF 1.......... attB2..............................
    ............................................................
    2161ggccgctgtcatcagatcgccatctcgcgcccgtgcctctgacttctaagtccaattact2220
    2161ccggcgacagtagtctagcggtagagcgcgggcacggagactgaagattcaggttaatga2220
    ............................................................
    ............................................................
    2221cttcaacatccctacatgctctttctccctgtgctcccaccccctatttttgttattatc2280
    2221gaagttgtagggatgtacgagaaagagggacacgagggtgggggataaaaacaataatag2280
    ............................................................
    ............................................................
    2281aaaaaacttctcttaatttctttgttttttagcttcttttaagtcacctctaacaatgaa2340
    2281ttttttgaagagaattaaagaaacaaaaaatcgaagaaaattcagtggagattgttactt2340
    ............................................................
    ............................................................
    2341attgtgtagattcaaaaatagaattaattcgtaataaaaagtcgaaaaaaattgtgctcc2400
    2341taacacatctaagtttttatcttaattaagcattatttttcagctttttttaacacgagg2400
    ............................................................
    ............................................................
    2401ctccccccattaataataattctatcccaaaatctacacaatgttctgtgtacacttctt2460
    2401gaggggggtaattattattaagatagggttttagatgtgttacaagacacatgtgaagaa2460
    ............................................................
    ............................................................
    2461atgttttttacttctgataaatttttttgaaacatcatagaaaaaaccgcacacaaaata2520
    2461tacaaaaaatgaagactatttaaaaaaactttgtagtatcttttttggcgtgtgttttat2520
    ............................................................
    ............................................................
    2521ccttatcatatgttacgtttcagtttatgaccgcaatttttatttcttcgcacgtctggg2580
    2521ggaatagtatacaatgcaaagtcaaatactggcgttaaaaataaagaagcgtgcagaccc2580
    ............................................................
    ............................................................
    2581cctctcatgacgtcaaatcatgctcatcgtgaaaaagttttggagtatttttggaatttt2640
    2581ggagagtactgcagtttagtacgagtagcactttttcaaaacctcataaaaaccttaaaa2640
    ............................................................
    ............................................................
    2641tcaatcaagtgaaagtttatgaaattaattttcctgcttttgctttttggggtttcccct2700
    2641agttagttcactttcaaatactttaattaaaaggacgaaaacgaaaaaccccaaagggga2700
    ............................................................
    ............................................................
    2701attgtttgtcaagatttcgaggacggcgtttttcttgctaaaatcacaagtattgatgag2760
    2701taacaaacagttctaaagctcctgccgcaaaaagaacgattttagtgttcataactactc2760
    ............................................................
    ............................................................
    2761cacgatgcaagaaagatcggaagaaggtttgggtttgaggctcagtggaaggtgagtaga2820
    2761gtgctacgttctttctagccttcttccaaacccaaactccgagtcaccttccactcatct2820
    ............................................................
    ............................................................
    2821agttgataatttgaaagtggagtagtgtctatggggtttttgccttaaatgacagaatac2880
    2821tcaactattaaactttcacctcatcacagataccccaaaaacggaatttactgtcttatg2880
    ............................................................
    ............................................................
    2881attcccaatataccaaacataactgtttccaactttattatacatagttgataattcact2940
    2881taagggttatatggtttgtattgacaaaggttgaaataatatgtatcaactattaagtga2940
    ............................................................
    ............................................................
    2941ggccgtcgttttacaacgtcgtgactgggaaaaccctggcgttacccaacttaatcgcct3000
    2941ccggcagcaaaatgttgcagcactgacccttttgggaccgcaatgggttgaattagcgga3000
    M13_forward20_pri M13_pUC_fwd_pri lacZ_a................
    ............................................................
    3001tgcagcacatccccctttcgccagctggcgtaatagcgaagaggcccgcaccgatcgccc3060
    3001acgtcgtgtagggggaaagcggtcgaccgcattatcgcttctccgggcgtggctagcggg3060
    .................... lacZ_a..............................
    .............................. NarI(3094)....................
    3061ttcccaacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctccttac3120
    3061aagggttgtcaacgcgtcggacttaccgcttaccgcggactacgccataaaagaggaatg3120
    .......... lacZ_a........................................
    ............................................................
    3121gcatctgtgcggtatttcacaccgcatatggtgcactctcagtacaatctgctctgatgc3180
    3121cgtagacacgccataaagtgtggcgtataccacgtgagagtcatgttagacgagactacg3180
    ............................................................
    ............................................................
    3181cgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttg3240
    3181gcgtatcaattcggtcggggctgtgggcggttgtgggcgactgcgcgggactgcccgaac3240
    ............................................................
    ............................................................
    3241tctgctcccggcatccgcttacagacaagctgtgaccgtctccgggagctgcatgtgtca3300
    3241agacgagggccgtaggcgaatgtctgttcgacactggcagaggccctcgacgtacacagt3300
    .................................................. pGEX_3_pri
    ............................................................
    3301gaggttttcaccgtcatcaccgaaacgcgcgagacgaaagggcctcgtgatacgcctatt3360
    3301ctccaaaagtggcagtagtggctttgcgcgctctgctttcccggagcactatgcggataa3360
    ............................................................
    ............................................................
    3361tttataggttaatgtcatgataataatggtttcttagacgtcaggtggcacttttcgggg3420
    3361aaatatccaattacagtactattattaccaaagaatctgcagtccaccgtgaaaagcccc3420
    ............................................................
    ............................................................
    3421aaatgtgcgcggaacccctatttgtttatttttctaaatacattcaaatatgtatccgct3480
    3421tttacacgcgccttggggataaacaaataaaaagatttatgtaagtttatacataggcga3480
    ........................................ AmpR_pro..........
    ............................................................
    3481catgagacaataaccctgataaatgcttcaataatattgaaaaaggaagagtatgagtat3540
    3481gtactctgttattgggactatttacgaagttattataactttttccttctcatactcata3540
    AmpR_pro..................................................
    ............................................................
    3541tcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcctgtttttgc3600
    3541agttgtaaaggcacagcgggaataagggaaaaaacgccgtaaaacggaaggacaaaaacg3600
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3601tcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgcacgagtggg3660
    3601agtgggtctttgcgaccactttcattttctacgacttctagtcaacccacgtgctcaccc3660
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3661ttacatcgaactggatctcaacagcggtaagatccttgagagttttcgccccgaagaacg3720
    3661aatgtagcttgacctagagttgtcgccattctaggaactctcaaaagcggggcttcttgc3720
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3721ttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcccgtattga3780
    3721aaaaggttactactcgtgaaaatttcaagacgatacaccgcgccataatagggcataact3780
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3781cgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttggttgagta3840
    3781gcggcccgttctcgttgagccagcggcgtatgtgataagagtcttactgaaccaactcat3840
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3841ctcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaattatgcagtgc3900
    3841gagtggtcagtgtcttttcgtagaatgcctaccgtactgtcattctcttaatacgtcacg3900
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3901tgccataaccatgagtgataacactgcggccaacttacttctgacaacgatcggaggacc3960
    3901acggtattggtactcactattgtgacgccggttgaatgaagactgttgctagcctcctgg3960
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3961gaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgccttgatcgttg4020
    3961cttcctcgattggcgaaaaaacgtgttgtaccccctagtacattgagcggaactagcaac4020
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4021ggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatgcctgtagc4080
    4021ccttggcctcgacttacttcggtatggtttgctgctcgcactgtggtgctacggacatcg4080
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4081aatggcaacaacgttgcgcaaactattaactggcgaactacttactctagcttcccggca4140
    4081ttaccgttgttgcaacgcgtttgataattgaccgcttgatgaatgagatcgaagggccgt4140
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4141acaattaatagactggatggaggcggataaagttgcaggaccacttctgcgctcggccct4200
    4141tgttaattatctgacctacctccgcctatttcaacgtcctggtgaagacgcgagccggga4200
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4201tccggctggctggtttattgctgataaatctggagccggtgagcgtgggtctcgcggtat4260
    4201aggccgaccgaccaaataacgactatttagacctcggccactcgcacccagagcgccata4260
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4261cattgcagcactggggccagatggtaagccctcccgtatcgtagttatctacacgacggg4320
    4261gtaacgtcgtgaccccggtctaccattcgggagggcatagcatcaatagatgtgctgccc4320
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4321gagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgat4380
    4321ctcagtccgttgatacctacttgctttatctgtctagcgactctatccacggagtgacta4380
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4381taagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaact4440
    4381attcgtaaccattgacagtctggttcaaatgagtatatatgaaatctaactaaattttga4440
    ORF 2 Ampicillin............................................
    ............................................................
    4441tcatttttaatttaaaaggatctaggtgaagatcctttttgataatctcatgaccaaaat4500
    4441agtaaaaattaaattttcctagatccacttctaggaaaaactattagagtactggtttta4500
    ............................................................
    ............................................................
    4501cccttaacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatc4560
    4501gggaattgcactcaaaagcaaggtgactcgcagtctggggcatcttttctagtttcctag4560
    ................................................ pBR322_origin
    ............................................................
    4561ttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgct4620
    4561aagaactctaggaaaaaaagacgcgcattagacgacgaacgtttgtttttttggtggcga4620
    .................. pBR322_origin............................
    ............................................................
    4621accagcggtggtttgtttgccggatcaagagctaccaactctttttccgaaggtaactgg4680
    4621tggtcgccaccaaacaaacggcctagttctcgatggttgagaaaaaggcttccattgacc4680
    .................. pBR322_origin............................
    ............................................................
    4681cttcagcagagcgcagataccaaatactgtccttctagtgtagccgtagttaggccacca4740
    4681gaagtcgtctcgcgtctatggtttatgacaggaagatcacatcggcatcaatccggtggt4740
    .................. pBR322_origin............................
    ............................................................
    4741cttcaagaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccagtggc4800
    4741gaagttcttgagacatcgtggcggatgtatggagcgagacgattaggacaatggtcaccg4800
    .................. pBR322_origin............................
    ............................................................
    4801tgctgccagtggcgataagtcgtgtcttaccgggttggactcaagacgatagttaccgga4860
    4801acgacggtcaccgctattcagcacagaatggcccaacctgagttctgctatcaatggcct4860
    .................. pBR322_origin............................
    ............................................................
    4861taaggcgcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaac4920
    4861attccgcgtcgccagcccgacttgccccccaagcacgtgtgtcgggtcgaacctcgcttg4920
    .................. pBR322_origin............................
    ............................................................
    4921gacctacaccgaactgagatacctacagcgtgagctatgagaaagcgccacgcttcccga4980
    4921ctggatgtggcttgactctatggatgtcgcactcgatactctttcgcggtgcgaagggct4980
    .................. pBR322_origin............................
    ............................................................
    4981agggagaaaggcggacaggtatccggtaagcggcagggtcggaacaggagagcgcacgag5040
    4981tccctctttccgcctgtccataggccattcgccgtcccagccttgtcctctcgcgtgctc5040
    .................. pBR322_origin............................
    ............................................................
    5041ggagcttccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctg5100
    5041cctcgaaggtccccctttgcggaccatagaaatatcaggacagcccaaagcggtggagac5100
    .................. pBR322_origin............................
    ............................................................
    5101acttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaacgccag5160
    5101tgaactcgcagctaaaaacactacgagcagtccccccgcctcggatacctttttgcggtc5160
    .................. pBR322_origin............................
    ............................................................
    5161caacgcggcctttttacggttcctggtcttttgctggccttttgctcacatgttctttcc5220
    5161gttgcgccggaaaaatgccaaggaccagaaaacgaccggaaaacgagtgtacaagaaagg5220
    ............................................................
    ............................................................
    5221tgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccag5280
    5221acgcaataggggactaagacacctattggcataatggcggaaactcactcgactatggtc5280
    ............................................................
    ............................................................
    5281cggataacaatttcacacaggaaacagctatgaccatgattacgccaagctatcaacttt5340
    5281gcctattgttaaagtgtgtcctttgtcgatactggtactaatgcggttcgatagttgaaa5340
    .... M13_pUC_rev_pri M13_reverse_pri........................

    References



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