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  • BVTech Plasmid

    This sequnce graph is created using BVTech Plasmid, which is DNA sequence analysis and plasmid drawing software for Windows PCs.You can use it to plan your DNA cloning, draw high quality plasmid maps, analyse your DNA sequencing data, align sequences, and much more.

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    Sequence of pGeneClip_Hygromycin

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    Sequence of pGeneClip Hygromycin : 4989 BP; 1206 A; 1257 C; 1362 G; 1164 T; 0 other;

    ...... ApaI(14),EcoRV(18) SalI(28) BamHI(40)................
    1gggcgaattgggcccgatatctctagagtcgacgaattcggatccctaaggaccagcttc60
    1cccgcttaacccgggctatagagatctcagctgcttaagcctagggattcctggtcgaag60
    ............................................................
    ............................................................
    61tttgggagagaacagacgcaggggcgggagggaaaaagggagaggcagacgtcacttccc120
    61aaaccctctcttgtctgcgtccccgccctccctttttccctctccgtctgcagtgaaggg120
    ............................................................
    ............................................................
    121cttggcggctctggcagcagattggtcggttgagtggcagaaaggcagacggggactggg180
    121gaaccgccgagaccgtcgtctaaccagccaactcaccgtctttccgtctgcccctgaccc180
    ............................................................
    ............................................................
    181caaggcactgtcggtgacatcacggacagggcgacttctatgtagatgaggcagcgcaga240
    181gttccgtgacagccactgtagtgcctgtcccgctgaagatacatctactccgtcgcgtct240
    ............................................................
    ............................................................
    241ggctgctgcttcgccacttgctgcttcaccacgaaggagttcccgtgccctgggagcggg300
    241ccgacgacgaagcggtgaacgacgaagtggtgcttcctcaagggcacgggaccctcgccc300
    ............................................................
    ............................................................
    301ttcaggaccgctgatcggaagtgagaatcccagctgtgtgtcagggctggaaagggctcg360
    301aagtcctggcgactagccttcactcttagggtcgacacacagtcccgacctttcccgagc360
    ............................................................
    ............................................................
    361ggagtgcgcggggcaagtgaccgtgtgtgtaaagagtgaggcgtatgaggctgtgtcggg420
    361cctcacgcgccccgttcactggcacacacatttctcactccgcatactccgacacagccc420
    ............................................................
    .......... BglII(432).................... NotI(468)..........
    421gcagaggcccaagatctcgcagtctggagtttcaaaagtagactgggcggccgcatcgat480
    421cgtctccgggttctagagcgtcagacctcaaagttttcatctgacccgccggcgtagcta480
    ............................................................
    HpaI(483) SacI(497)........................................
    481gttaacctcgaggagctcccaacgcgttggatgcatagcttgagtattctatagtgtcac540
    481caattggagctcctcgagggttgcgcaacctacgtatcgaactcataagatatcacagtg540
    .................................................. Sp6_pri
    ............................................................
    541ctaaatagcttggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctc600
    541gatttatcgaaccgcattagtaccagtatcgacaaaggacacactttaacaataggcgag600
    ................. M13_reverse_pri.... M13_pUC_rev_pri.......
    ............................................................
    601acaattccacacaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatga660
    601tgttaaggtgtgttgtatgctcggccttcgtatttcacatttcggaccccacggattact660
    .................... lac_pro..............................
    ............................................................
    661gtgagctaactcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctg720
    661cactcgattgagtgtaattaacgcaacgcgagtgacgggcgaaaggtcagccctttggac720
    ............................................................
    ............................................................
    721tcgtgccagctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattggg780
    721agcacggtcgacgtaattacttagccggttgcgcgcccctctccgccaaacgcataaccc780
    ............................................................
    ............................................................
    781cgctcttccgctgatctgcgcagcaccatggcctgaaataacctctgaaagaggaacttg840
    781gcgagaaggcgactagacgcgtcgtggtaccggactttattggagactttctccttgaac840
    ............................................................
    KpnI(849)..................................................
    841gttaggtaccttctgaggcggaaagaaccagctgtggaatgtgtgtcagttagggtgtgg900
    841caatccatggaagactccgcctttcttggtcgacaccttacacacagtcaatcccacacc900
    ....................................... pBABE_3_pri SV40_enh
    ............................................................
    901aaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctcaattagtcagc960
    901tttcaggggtccgaggggtcgtccgtcttcatacgtttcgtacgtagagttaatcagtcg960
    ................ SV40_enh SV40_pro..........................
    ............................................................
    961aaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatct1020
    961ttggtccacacctttcaggggtccgaggggtcgtccgtcttcatacgtttcgtacgtaga1020
    ................ SV40_enh SV40_pro..........................
    ............................................................
    1021caattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaactccgcc1080
    1021gttaatcagtcgttggtatcagggcggggattgaggcgggtagggcggggattgaggcgg1080
    ............ SV40_enh SV40_pro SV40_pro. SV40_origin.........
    ............................................................
    1081cagttccgcccattctccgccccatggctgactaattttt tttatttatgcagaggccga1140
    1081gtcaaggcgggtaagaggcggggtaccgactgattaaaaaaaataaatacgtctccggct1140
    SV40_enh SV40_pro SV40_pro SV40_origin........ SV40pro_F_pri
    ............................................................
    1141ggccgcctcggcctctgagctattccagaagtagtgaggaggcttttttggaggcctagg1200
    1141ccggcggagccggagactcgataaggtcttcatcactcctccgaaaaaacctccggatcc1200
    .......... SV40_pro SV40_pro..............................
    .................... NheI(1229).......... SmaI(1242)..........
    1201cttttgcaaaaagcttgattcttctgacgctagcgatcgcccgggccaccatgaaaaagc1260
    1201gaaaacgtttttcgaactaagaagactgcgatcgctagcgggcccggtggtactttttcg1260
    SV40_pro.............................. ORF 3 ORF 3
    ............................................................
    1261ctgaactcaccgcgacgtctgtcgagaagtttctgatcgaaaagttcgacagcgtgtccg1320
    1261gacttgagtggcgctgcagacagctcttcaaagactagcttttcaagctgtcgcacaggc1320
    ................... ORF 3 ORF 3 hygroB...................
    ............................................................
    1321acctgatgcagctctcggagggcgaagaatctcgtgctttcagcttcgatgtaggagggc1380
    1321tggactacgtcgagagcctcccgcttcttagagcacgaaagtcgaagctacatcctcccg1380
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1381gtggatatgtcctgcgggtaaatagctgcgccgatggtttctacaaagatcgttatgttt1440
    1381cacctatacaggacgcccatttatcgacgcggctaccaaagatgtttctagcaatacaaa1440
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1441atcggcactttgcatcggccgcgctcccgattccggaagtgcttgacattggggaattca1500
    1441tagccgtgaaacgtagccggcgcgagggctaaggccttcacgaactgtaaccccttaagt1500
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1501gcgagagcctgacctattgcatctcccgccgtgcacagggtgtcacgttgcaagacctgc1560
    1501cgctctcggactggataacgtagagggcggcacgtgtcccacagtgcaacgttctggacg1560
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1561ctgaaaccgaactgcccgctgttctgcagccggtcgcggaggccatggatgcgatcgctg1620
    1561gactttggcttgacgggcgacaagacgtcggccagcgcctccggtacctacgctagcgac1620
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1621cggccgatcttagccagacgagcgggttcggcccattcggaccgcaaggaatcggtcaat1680
    1621gccggctagaatcggtctgctcgcccaagccgggtaagcctggcgttccttagccagtta1680
    ................ ORF 3 ORF 3 hygroB..........................
    .................... NdeI(1701)..............................
    1681acactacatggcgtgatttcatatgcgcgattgctgatccccatgtgtatcactggcaaa1740
    1681tgtgatgtaccgcactaaagtatacgcgctaacgactaggggtacacatagtgaccgttt1740
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1741ctgtgatggacgacaccgtcagtgcgtccgtcgcgcaggctctcgatgagctgatgcttt1800
    1741gacactacctgctgtggcagtcacgcaggcagcgcgtccgagagctactcgactacgaaa1800
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1801gggccgaggactgccccgaagtccggcacctcgtgcacgcggatttcggctccaacaatg1860
    1801cccggctcctgacggggcttcaggccgtggagcacgtgcgcctaaagccgaggttgttac1860
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1861tcctgacggacaatggccgcataacagcggtcattgactggagcgaggcgatgttcgggg1920
    1861aggactgcctgttaccggcgtattgtcgccagtaactgacctcgctccgctacaagcccc1920
    ................ ORF 3 ORF 3 hygroB..........................
    ............................................................
    1921attcccaatacgaggtcgccaacatcttcttctggaggccgtggttggcttgtatggagc1980
    1921taagggttatgctccagcggttgtagaagaagacctccggcaccaaccgaacatacctcg1980
    ................ ORF 3 ORF 3 hygroB..........................
    ................................................. SacII(2031)
    1981agcagacgcgctacttcgagcggaggcatccggagcttgcaggatcgccgcggctccggg2040
    1981tcgtctgcgcgatgaagctcgcctccgtaggcctcgaacgtcctagcggcgccgaggccc2040
    ......... ORF 3 ORF 3 hygroB.............................
    ............................................................
    2041cgtatatgctccgcattggtcttgaccaactctatcagagcttggttgacggcaatttcg2100
    2041gcatatacgaggcgtaaccagaactggttgagatagtctcgaaccaactgccgttaaagc2100
    ................... ORF 3 hygroB.............................
    ............................................................
    2101atgatgcagcttgggcgcagggtcgatgcgacgcaatcgtccgatccggagccgggactg2160
    2101tactacgtcgaacccgcgtcccagctacgctgcgttagcaggctaggcctcggccctgac2160
    ................... ORF 3 hygroB.............................
    ............................................................
    2161tcgggcgtacacaaatcgcccgcagaagcgcggccgtctggaccgatggctgtgtagaag2220
    2161agcccgcatgtgtttagcgggcgtcttcgcgccggcagacctggctaccgacacatcttc2220
    ................... ORF 3 hygroB.............................
    ............................................................
    2221tactcgccgatagtggaaaccgacgccccagcactcgtccgagggcaaaggaatagctcg2280
    2221atgagcggctatcacctttggctgcggggtcgtgagcaggctcccgtttccttatcgagc2280
    ................... ORF 3 hygroB.............................
    ............................................................
    2281agtttaaactctagaaccggtcatggccgcaataaaatatctttattttcattacatctg2340
    2281tcaaatttgagatcttggccagtaccggcgttattttatagaaataaaagtaatgtagac2340
    ...................................... synth_PA_term........
    ................... BstBI(2361).............................
    2341tgtgttggttttttgtgtgttcgaactagaagcttgcttcctcgctcactgactcgctgc2400
    2341acacaaccaaaaaacacacaagcttgatcttcgaacgaaggagcgagtgactgagcgacg2400
    synth_PA_term..............................................
    ............................................................
    2401gctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttat2460
    2401cgagccagcaagccgacgccgctcgccatagtcgagtgagtttccgccattatgccaata2460
    ............................................................
    ............................................................
    2461ccacagaatcaggggataacgcaggaaagaacatgtgagcaaaaggccagcaaaaggcca2520
    2461ggtgtcttagtcccctattgcgtcctttcttgtacactcgttttccggtcgttttccggt2520
    ............................................................
    ............................................................
    2521ggaaccgtaaaaaggccgcgttgctggcgtttttccataggctccgcccccctgacgagc2580
    2521ccttggcatttttccggcgcaacgaccgcaaaaaggtatccgaggcggggggactgctcg2580
    ............................ pBR322_origin..................
    ............................................................
    2581atcacaaaaatcgacgctcaagtcagaggtggcgaaacccgacaggactataaagatacc2640
    2581tagtgtttttagctgcgagttcagtctccaccgctttgggctgtcctgatatttctatgg2640
    .................. pBR322_origin............................
    ............................................................
    2641aggcgtttccccctggaagctccctcgtgcgctctcctgttccgaccctgccgcttaccg2700
    2641tccgcaaagggggaccttcgagggagcacgcgagaggacaaggctgggacggcgaatggc2700
    .................. pBR322_origin............................
    ............................................................
    2701gatacctgtccgcctttctcccttcgggaagcgtggcgctttctcatagctcacgctgta2760
    2701ctatggacaggcggaaagagggaagcccttcgcaccgcgaaagagtatcgagtgcgacat2760
    .................. pBR322_origin............................
    ............................................................
    2761ggtatctcagttcggtgtaggtcgttcgctccaagctgggctgtgtgcacgaaccccccg2820
    2761ccatagagtcaagccacatccagcaagcgaggttcgacccgacacacgtgcttggggggc2820
    .................. pBR322_origin............................
    ............................................................
    2821ttcagcccgaccgctgcgccttatccggtaactatcgtcttgagtccaacccggtaagac2880
    2821aagtcgggctggcgacgcggaataggccattgatagcagaactcaggttgggccattctg2880
    .................. pBR322_origin............................
    ............................................................
    2881acgacttatcgccactggcagcagccactggtaacgggattagcagagcgaggtatgtag2940
    2881tgctgaatagcggtgaccgtcgtcggtgaccattgccctaatcgtctcgctccatacatc2940
    .................. pBR322_origin............................
    ............................................................
    2941gcggtgctacagagttcttgaagtggtggcctaactacggctacactagaagaacagtat3000
    2941cgccacgatgtctcaagaacttcaccaccggattgatgccgatgtgatcttcttgtcata3000
    .................. pBR322_origin............................
    ............................................................
    3001ttggtatctgcgctctgctgaagccagttaccttcggaaaaagagttggtagctcttgat3060
    3001aaccatagacgcgagacgacttcggtcaatggaagcctttttctcaaccatcgagaacta3060
    .................. pBR322_origin............................
    ............................................................
    3061ccggcaaacaaaccaccgctggtagcggtggtttttttgtttgcaagcagcagattacgc3120
    3061ggccgtttgtttggtggcgaccatcgccaccaaaaaaacaaacgttcgtcgtctaatgcg3120
    .................. pBR322_origin............................
    ............................................................
    3121gcagaaaaaaaggatctcaagaagatcctttgatcttttctacggggtctgacgctcagt3180
    3121cgtctttttttcctagagttcttctaggaaactagaaaagatgccccagactgcgagtca3180
    ........ pBR322_origin......................................
    ............................................................
    3181ggaacgaaaactcacgttaagggattttggtcatgagattatcaaaaaggatcttcacct3240
    3181ccttgcttttgagtgcaattccctaaaaccagtactctaatagtttttcctagaagtgga3240
    ............................................................
    ............................................................
    3241agatccttttaaattaaaaatgaagttttaaatcaatctaaagtatatatgagtaaactt3300
    3241tctaggaaaatttaatttttacttcaaaatttagttagatttcatatatactcatttgaa3300
    ............................................................
    ............................................................
    3301ggtctgacagttaccaatgcttaatcagtgaggcacctatctcagcgatctgtctatttc3360
    3301ccagactgtcaatggttacgaattagtcactccgtggatagagtcgctagacagataaag3360
    ........................... ORF 2 Ampicillin.................
    ............................................................
    3361gttcatccatagttgcctgactccccgtcgtgtagataactacgatacgggagggcttac3420
    3361caagtaggtatcaacggactgaggggcagcacatctattgatgctatgccctcccgaatg3420
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3421catctggccccagtgctgcaatgataccgcgagacccacgctcaccggctccagatttat3480
    3421gtagaccggggtcacgacgttactatggcgctctgggtgcgagtggccgaggtctaaata3480
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3481cagcaataaaccagccagccggaagggccgagcgcagaagtggtcctgcaactttatccg3540
    3481gtcgttatttggtcggtcggccttcccggctcgcgtcttcaccaggacgttgaaataggc3540
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3541cctccatccagtctattaattgttgccgggaagctagagtaagtagttcgccagttaata3600
    3541ggaggtaggtcagataattaacaacggcccttcgatctcattcatcaagcggtcaattat3600
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3601gtttgcgcaacgttgttgccattgctacaggcatcgtggtgtcacgctcgtcgtttggta3660
    3601caaacgcgttgcaacaacggtaacgatgtccgtagcaccacagtgcgagcagcaaaccat3660
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3661tggcttcattcagctccggttcccaacgatcaaggcgagttacatgatcccccatgttgt3720
    3661accgaagtaagtcgaggccaagggttgctagttccgctcaatgtactagggggtacaaca3720
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3721gcaaaaaagcggttagctccttcggtcctccgatcgttgtcagaagtaagttggccgcag3780
    3721cgttttttcgccaatcgaggaagccaggaggctagcaacagtcttcattcaaccggcgtc3780
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3781tgttatcactcatggttatggcagcactgcataattctcttactgtcatgccatccgtaa3840
    3781acaatagtgagtaccaataccgtcgtgacgtattaagagaatgacagtacggtaggcatt3840
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3841gatgcttttctgtgactggtgagtactcaaccaagtcattctgagaatagtgtatgcggc3900
    3841ctacgaaaagacactgaccactcatgagttggttcagtaagactcttatcacatacgccg3900
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3901gaccgagttgctcttgcccggcgtcaatacgggataataccgcgccacatagcagaactt3960
    3901ctggctcaacgagaacgggccgcagttatgccctattatggcgcggtgtatcgtcttgaa3960
    ................. ORF 2 Ampicillin...........................
    ............................................................
    3961taaaagtgctcatcattggaaaacgttcttcggggcgaaaactctcaaggatcttaccgc4020
    3961attttcacgagtagtaaccttttgcaagaagccccgcttttgagagttcctagaatggcg4020
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4021tgttgagatccagttcgatgtaacccactcgtgcacccaactgatcttcagcatctttta4080
    4021acaactctaggtcaagctacattgggtgagcacgtgggttgactagaagtcgtagaaaat4080
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4081ctttcaccagcgtttctgggtgagcaaaaacaggaaggcaaaatgccgcaaaaaagggaa4140
    4081gaaagtggtcgcaaagacccactcgtttttgtccttccgttttacggcgttttttccctt4140
    ................. ORF 2 Ampicillin...........................
    ............................................................
    4141taagggcgacacggaaatgttgaatactcatactcttcctttttcaatattattgaagca4200
    4141attcccgctgtgcctttacaacttatgagtatgagaaggaaaaagttataataacttcgt4200
    ....... ORF 2 Ampicillin.....................................
    ............................................................
    4201tttatcagggttattgtctcatgagcggatacatatttgaatgtatttagaaaaataaac4260
    4201aaatagtcccaataacagagtactcgcctatgtataaacttacataaatctttttatttg4260
    .................... AmpR_pro..............................
    ............................................................
    4261aaataggggttccgcgcacatttccccgaaaagtgccacctgatgcggtgtgaaataccg4320
    4261tttatccccaaggcgcgtgtaaaggggcttttcacggtggactacgccacactttatggc4320
    ............................................................
    ............................................................
    4321cacagatgcgtaaggagaaaataccgcatcaggaaattgtaagcgttaatattttgttaa4380
    4321gtgtctacgcattcctcttttatggcgtagtcctttaacattcgcaattataaaacaatt4380
    ............................................................
    ............................................................
    4381aattcgcgttaaatttttgttaaatcagctcattttttaaccaataggccgaaatcggca4440
    4381ttaagcgcaatttaaaaacaatttagtcgagtaaaaaattggttatccggctttagccgt4440
    ............................................................
    ............................................................
    4441aaatcccttataaatcaaaagaatagaccgagatagggttgagtgttgttccagtttgga4500
    4441tttagggaatatttagttttcttatctggctctatcccaactcacaacaaggtcaaacct4500
    .................................................. f1_origin
    ............................................................
    4501acaagagtccactattaaagaacgtggactccaacgtcaaagggcgaaaaaccgtctatc4560
    4501tgttctcaggtgataatttcttgcacctgaggttgcagtttcccgctttttggcagatag4560
    .................... f1_origin..............................
    ............................................................
    4561agggcgatggcccactacgtgaaccatcaccctaatcaagttttttggggtcgaggtgcc4620
    4561tcccgctaccgggtgatgcacttggtagtgggattagttcaaaaaaccccagctccacgg4620
    .................... f1_origin..............................
    ............................................................
    4621gtaaagcactaaatcggaaccctaaagggagcccccgatttagagcttgacggggaaagc4680
    4621catttcgtgatttagccttgggatttccctcgggggctaaatctcgaactgcccctttcg4680
    .................... f1_origin..............................
    ............................................................
    4681cggcgaacgtggcgagaaaggaagggaagaaagcgaaaggagcgggcgctagggcgctgg4740
    4681gccgcttgcaccgctctttccttcccttctttcgctttcctcgcccgcgatcccgcgacc4740
    .................... f1_origin..............................
    ............................................................
    4741caagtgtagcggtcacgctgcgcgtaaccaccacacccgccgcgcttaatgcgccgctac4800
    4741gttcacatcgccagtgcgacgcgcattggtggtgtgggcggcgcgaattacgcggcgatg4800
    .................... f1_origin..............................
    ............................................................
    4801agggcgcgtccattcgccattcaggctgcgcaactgttgggaagggcgatcggtgcgggc4860
    4801tcccgcgcaggtaagcggtaagtccgacgcgttgacaacccttcccgctagccacgcccg4860
    .............................. lacZ_a....................
    ............................................................
    4861ctcttcgctattacgccagctggcgaaagggggatgtgctgcaaggcgattaagttgggt4920
    4861gagaagcgataatgcggtcgaccgctttccccctacacgacgttccgctaattcaaccca4920
    .................... lacZ_a..............................
    ............................................................
    4921aacgccagggttttcccagtcacgacgttgtaaaacgacggccagtgaattgtaatacga4980
    4921ttgcggtcccaaaagggtcagtgctgcaacattttgctgccggtcacttaacattatgct4980
    .......... lacZ_a M13_pUC_fwd_pri M13_forward20_pri..........
    ............................................................
    4981ctcactata...................................................4989
    4981gagtgatat...................................................4989
    ............................................................

    References



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