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  • BVTech Plasmid

    This sequnce graph is created using BVTech Plasmid, which is DNA sequence analysis and plasmid drawing software for Windows PCs.You can use it to plan your DNA cloning, draw high quality plasmid maps, analyse your DNA sequencing data, align sequences, and much more.

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    Sequence of pHcRed1-C1

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    Sequence of pHcRed1-C1 : 4698 BP; 1117 A; 1276 C; 1251 G; 1054 T; 0 other;

    AseI(7)..................................................
    1tagttattaatagtaatcaattacggggtcattagttcatagcccatatatggagttccg60
    1atcaataattatcattagttaatgccccagtaatcaagtatcgggtatatacctcaaggc60
    ........................... CMV_immearly_pro.................
    ............................................................
    61cgttacataacttacggtaaatggcccgcctggctgaccgcccaacgacc< font color="#000000" style="font-size:10px" face="Courier">cccgcccatt120
    61gcaatgtattgaatgccatttaccgggcggaccgactggcgggttgctgggggcgggtaa120
    ................. CMV_immearly_pro CAG_enh.................
    ............................................................
    121gacgtcaataatgacgtatgttcccatagtaacgccaatagggactttcc attgacgtca180
    121ctgcagttattactgcatacaagggtatcattgcggttatccctgaaaggtaactgcagt180
    ............. CAG_enh CMV_immearly_pro.......................
    .................................................. NdeI(234)
    181atgggtggagtatttacggtaaactgcccacttggcagtacatcaagtgt atcatatgcc240
    181tacccacctcataaatgccatttgacgggtgaaccgtcatgtagttcacatagtatacgg240
    ............. CAG_enh CMV_immearly_pro.......................
    ............................................................
    241aagtacgccccctattgacgtcaatgacggtaaatggcccgcctggcatt atgcccagta300
    241ttcatgcgggggataactgcagttactgccatttaccgggcggaccgtaatacgggtcat300
    ............. CAG_enh CMV_immearly_pro.......................
    ............................................................
    301catgaccttatgggactttcctacttggcagtacatctacgtattagtca tcgctattac360
    301gtactggaataccctgaaaggatgaaccgtcatgtagatgcataatcagtagcgataatg360
    ............. CAG_enh CMV_immearly_pro.......................
    ............................................................
    361catggtgatgcggttttggcagtacatcaatgggcgtggatagcggtttgactcacgggg420
    361gtaccactacgccaaaaccgtcatgtagttacccgcacctatcgccaaactgagtgcccc420
    ................. CMV_immearly_pro...........................
    ............................................................
    421atttccaagtctccaccccattgacgtcaatgggagtttgttttggcaccaaaatcaacg480
    421taaaggttcagaggtggggtaactgcagttaccctcaaacaaaaccgtggttttagttgc480
    ................. CMV_immearly_pro...........................
    ............................................................
    481ggactttccaaaatgtcgtaacaactccgccccattgacgcaaatgggcggtaggcgtgt540
    481cctgaaaggttttacagcattgttgaggcggggtaactgcgtttacccgccatccgcaca540
    ................. CMV_immearly_pro.. CMV_fwd_pri CMV_pro.....
    ............................................. NheI(591) AgeI(600)
    541acggtgggaggtctatataagcagagctggtttagtgaaccgtcagatccgctagcgcta600
    541tgccaccctccagatatattcgtctcgaccaaatcacttggcagtctaggcgatcgcgat600
    ....... CMV_immearly_pro CMV_pro...........................
    ............................................................
    601ccggtcgccaccatggtgagcggcctgctgaaggagagtatgcgcatcaagatgtacatg660
    601ggccagcggtggtaccactcgccggacgacttcctctcatacgcgtagttctacatgtac660
    .................... ORF 1 ORF 1....................
    ............................................................
    661gagggcaccgtgaacggccactacttcaagtgcgagggcgagggcgacggcaaccccttc720
    661ctcccgtggcacttgccggtgatgaagttcacgctcccgctcccgctgccgttggggaag720
    ................... ORF 1 ORF 1.............................
    .................... PmlI(747)..............................
    721gccggcacccagagcatgagaatccacgtgaccgagggcgcccccctgcccttcgccttc780
    721cggccgtgggtctcgtactcttaggtgcactggctcccgcggggggacgggaagcggaag780
    ................... ORF 1 ORF 1.............................
    ............................................................
    781gacatcctggccccctgctgcgagtacggcagcaggaccttcgtgcaccacaccgccgag840
    781ctgtaggaccgggggacgacgctcatgccgtcgtcctggaagcacgtggtgtggcggctc840
    ................... ORF 1 ORF 1.............................
    ............................................................
    841atccccgacttcttcaagcagagcttccccgagggcttcacctgggagagaaccaccacc900
    841taggggctgaagaagttcgtctcgaaggggctcccgaagtggaccctctcttggtggtgg900
    ................... ORF 1 ORF 1.............................
    ............................................................
    901tacgaggacggcggcatcctgaccgcccaccaggacaccagcctggagggcaactgcctg960
    901atgctcctgccgccgtaggactggcgggtggtcctgtggtcggacctcccgttgacggac960
    ................... ORF 1 ORF 1.............................
    ............................................................
    961atctacaaggtgaaggtgcacggcaccaacttccccgccgacggccccgtgatgaagaac1020
    961tagatgttccacttccacgtgccgtggttgaaggggcggctgccggggcactacttcttg1020
    ................... ORF 1 ORF 1.............................
    ............................................................
    1021aagagcggcggctgggagcccagcaccgaggtggtgtaccccgagaacggcgtgctgtgc1080
    1021ttctcgccgccgaccctcgggtcgtggctccaccacatggggctcttgccgcacgacacg1080
    ................... ORF 1 ORF 1.............................
    ............................................................
    1081ggccggaacgtgatggccctgaaggtgggcgaccggcacctgatctgccaccactacacc1140
    1081ccggccttgcactaccgggacttccacccgctggccgtggactagacggtggtgatgtgg1140
    ................... ORF 1 ORF 1.............................
    ............................................................
    1141agctaccggagcaagaaggccgtgcgcgccctgaccatgcccggcttccacttcaccgac1200
    1141tcgatggcctcgttcttccggcacgcgcgggactggtacgggccgaaggtgaagtggctg1200
    ................... ORF 1 ORF 1.............................
    ............................................................
    1201atccggctccagatgctgcggaagaagaaggacgagtacttcgagctgtacgaggccagc1260
    1201taggccgaggtctacgacgccttcttcttcctgctcatgaagctcgacatgctccggtcg1260
    ................... ORF 1 ORF 1.............................
    .................................. BglII(1306),XhoI(1310)....
    1261gtggcccggtacagcgacctgcccgagaaggccaactccggactcagatctcgagctcaa1320
    1261caccgggccatgtcgctggacgggctcttccggttgaggcctgagtctagagctcgagtt1320
    ................... ORF 1 ORF 1.............................
    EcoRI PstI,SalI KpnI,SacII,ApaI,SmaI,BamHI XbaI BclI
    1321gcttcgaattctgcagtcgacggtaccgcgggcccgggatccaccggatctagataactg1380
    1321cgaagcttaagacgtcagctgccatggcgcccgggccctaggtggcctagatctattgac1380
    ................... ORF 1 ORF 1.............................
    ............................................................
    1381atcataatcagccataccacatttgtagaggttttacttgctttaaaaaacctcccacac1440
    1381tagtattagtcggtatggtgtaaacatctccaaaatgaacgaaattttttggagggtgtg1440
    ORF 1......... SV40_PA_term.............................
    ........................................ HpaI(1485)..........
    1441ctccccctgaacctgaaacataaaatgaatgcaattgttgttgttaacttgtttattgca1500
    1441gagggggacttggactttgtattttacttacgttaacaacaacaattgaacaaataacgt1500
    ................... SV40_PA_term.............................
    ............................................................
    1501gcttataatggttacaaataaagcaatagcatcacaaatttcacaaataaagcatttttt1560
    1501cgaatattaccaatgtttatttcgttatcgtagtgtttaaagtgtttatttcgtaaaaaa1560
    ................... SV40_PA_term.............................
    ............................................................
    1561tcactgcattctagttgtggtttgtccaaactcatcaatgtatcttaacgcgtaaattgt1620
    1561agtgacgtaagatcaacaccaaacaggtttgagtagttacatagaattgcgcatttaaca1620
    ............. SV40_PA_term EBV_rev_pri.......................
    ............................................................
    1621aagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctcattttttaa1680
    1621ttcgcaattataaaacaattttaagcgcaatttaaaaacaatttagtcgagtaaaaaatt1680
    ............................................................
    ............................................................
    1681ccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccgagatagggtt1740
    1681ggttatccggctttagccgttttagggaatatttagttttcttatctggctctatcccaa1740
    ............................................................
    ............................................................
    1741gagtgttgttccagtttggaacaagagtccactattaaagaacgtggactccaacgtcaa1800
    1741ctcacaacaaggtcaaaccttgttctcaggtgataatttcttgcacctgaggttgcagtt1800
    .............................. f1_origin....................
    ............................................................
    1801agggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcaccctaatcaag1860
    1801tcccgctttttggcagatagtcccgctaccgggtgatgcacttggtagtgggattagttc1860
    .................... f1_origin..............................
    ............................................................
    1861ttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggagcccccgatt1920
    1861aaaaaaccccagctccacggcatttcgtgatttagccttgggatttccctcgggggctaa1920
    .................... f1_origin..............................
    ............................................................
    1921tagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaaagcgaaagg1980
    1921atctcgaactgcccctttcggccgcttgcaccgctctttccttcccttctttcgctttcc1980
    .................... f1_origin..............................
    ............................................................
    1981agcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccaccacacccgc2040
    1981tcgcccgcgatcccgcgaccgttcacatcgccagtgcgacgcgcattggtggtgtgggcg2040
    .................... f1_origin..............................
    ............................................................
    2041cgcgcttaatgcgccgctacagggcgcgtcaggtggcacttttcggggaaatgtgcgcgg2100
    2041gcgcgaattacgcggcgatgtcccgcgcagtccaccgtgaaaagcccctttacacgcgcc2100
    f1_origin..................................................
    ............................................................
    2101aacccctatttgtttatttttctaaatacattcaaatatgtatccgctcatgagacaata2160
    2101ttggggataaacaaataaaaagatttatgtaagtttatacataggcgagtactctgttat2160
    ........................................ AmpR_pro..........
    ............................................................
    2161accctgataaatgcttcaataatattgaaaaaggaagagtcctgaggcggaaagaaccag2220
    2161tgggactatttacgaagttattataactttttccttctcaggactccgcctttcttggtc2220
    ............................................................
    ............................................................
    2221ctgtggaatgtgtgtcagttagggtgtggaaagtccccaggctccccagcaggcagaagt2280
    2221gacaccttacacacagtcaatcccacacctttcaggggtccgaggggtcgtccgtcttca2280
    ......... pBABE_3_pri......... SV40_enh SV40_pro..........
    ............................................................
    2281atgcaaagcatgcatctcaattagtcagcaaccaggtgtggaaagtccccaggctcccca2340
    2281tacgtttcgtacgtagagttaatcagtcgttggtccacacctttcaggggtccgaggggt2340
    ................ SV40_enh SV40_pro..........................
    ............................................................
    2341gcaggcagaagtatgcaaagcatgcatctcaattagtcagcaaccatagtcccgccccta2400
    2341cgtccgtcttcatacgtttcgtacgtagagttaatcagtcgttggtatcagggcggggat2400
    ................ SV40_enh SV40_pro..........................
    ............................................................
    2401actccgcccatcccgcccctaactccgcccagttccgcccattctccgccccatggctga2460
    2401tgaggcgggtagggcggggattgaggcgggtcaaggcgggtaagaggcggggtaccgact2460
    ............... SV40_enh SV40_pro SV40_origin...............
    ............................................................
    2461ctaattttttttatttatgcagaggccgaggccgcctcggcctctgagctattccagaag2520
    2461gattaaaaaaaataaatacgtctccggctccggcggagccggagactcgataaggtcttc2520
    ... SV40_origin SV40_pro SV40pro_F_pri.......................
    .................... StuI(2543).......... ClaI(2562)..........
    2521tagtgaggaggcttttttggaggcctaggcttttgcaaagatcgatcaagagacaggatg2580
    2521atcactcctccgaaaaaacctccggatccgaaaacgtttctagctagttctctgtcctac2580
    ............................................................
    ............................................................
    2581aggatcgtttcgcatgattgaacaagatggattgcacgcaggttctccggccgcttgggt2640
    2581tcctagcaaagcgtactaacttgttctacctaacgtgcgtccaagaggccggcgaaccca2640
    ............................ ORF 2 Neomycin..................
    ............................................................
    2641ggagaggctattcggctatgactgggcacaacagacaatcggctgctctgatgccgccgt2700
    2641cctctccgataagccgatactgacccgtgttgtctgttagccgacgagactacggcggca2700
    .................. ORF 2 Neomycin............................
    ............................................................
    2701gttccggctgtcagcgcaggggcgcccggttctttttgtcaagaccgacctgtccggtgc2760
    2701caaggccgacagtcgcgtccccgcgggccaagaaaaacagttctggctggacaggccacg2760
    .................. ORF 2 Neomycin............................
    ........................................ MscI(2804)..........
    2761cctgaatgaactgcaagacgaggcagcgcggctatcgtggctggccacgacgggcgttcc2820
    2761ggacttacttgacgttctgctccgtcgcgccgatagcaccgaccggtgctgcccgcaagg2820
    .................. ORF 2 Neomycin............................
    ............................................................
    2821ttgcgcagctgtgctcgacgttgtcactgaagcgggaagggactggctgctattgggcga2880
    2821aacgcgtcgacacgagctgcaacagtgacttcgcccttccctgaccgacgataacccgct2880
    .................. ORF 2 Neomycin............................
    ............................................................
    2881agtgccggggcaggatctcctgtcatctcaccttgctcctgccgagaaagtatccatcat2940
    2881tcacggccccgtcctagaggacagtagagtggaacgaggacggctctttcataggtagta2940
    .................. ORF 2 Neomycin............................
    ............................................................
    2941ggctgatgcaatgcggcggctgcatacgcttgatccggctacctgcccattcgaccacca3000
    2941ccgactacgttacgccgccgacgtatgcgaactaggccgatggacgggtaagctggtggt3000
    .................. ORF 2 Neomycin............................
    ............................................................
    3001agcgaaacatcgcatcgagcgagcacgtactcggatggaagccggtcttgtcgatcagga3060
    3001tcgctttgtagcgtagctcgctcgtgcatgagcctaccttcggccagaacagctagtcct3060
    .................. ORF 2 Neomycin............................
    ............................................................
    3061tgatctggacgaagagcatcaggggctcgcgccagccgaactgttcgccaggctcaaggc3120
    3061actagacctgcttctcgtagtccccgagcgcggtcggcttgacaagcggtccgagttccg3120
    .................. ORF 2 Neomycin............................
    ............................................................
    3121gagcatgcccgacggcgaggatctcgtcgtgacccatggcgatgcctgcttgccgaatat3180
    3121ctcgtacgggctgccgctcctagagcagcactgggtaccgctacggacgaacggcttata3180
    .................. ORF 2 Neomycin............................
    ............................................................
    3181catggtggaaaatggccgcttttctggattcatcgactgtggccggctgggtgtggcgga3240
    3181gtaccaccttttaccggcgaaaagacctaagtagctgacaccggccgacccacaccgcct3240
    .................. ORF 2 Neomycin............................
    ............................................................
    3241ccgctatcaggacatagcgttggctacccgtgatattgctgaagagcttggcggcgaatg3300
    3241ggcgatagtcctgtatcgcaaccgatgggcactataacgacttctcgaaccgccgcttac3300
    .................. ORF 2 Neomycin............................
    ............................................................
    3301ggctgaccgcttcctcgtgctttacggtatcgccgctcccgattcgcagcgcatcgcctt3360
    3301ccgactggcgaaggagcacgaaatgccatagcggcgagggctaagcgtcgcgtagcggaa3360
    .................. ORF 2 Neomycin............................
    ............................................................
    3361ctatcgccttcttgacgagttcttctgagcgggactctggggttcgaaatgaccgaccaa3420
    3361gatagcggaagaactgctcaagaagactcgccctgagaccccaagctttactggctggtt3420
    ........ ORF 2 Neomycin......................................
    ............................................................
    3421gcgacgcccaacctgccatcacgagatttcgattccaccgccgccttctatgaaaggttg3480
    3421cgctgcgggttggacggtagtgctctaaagctaaggtggcggcggaagatactttccaac3480
    ............................................................
    ............................................................
    3481ggcttcggaatcgttttccgggacgccggctggatgatcctccagcgcggggatctcatg3540
    3481ccgaagccttagcaaaaggccctgcggccgacctactaggaggtcgcgcccctagagtac3540
    ............................................................
    ............................................................
    3541ctggagttcttcgcccaccctagggggaggctaactgaaacacggaaggagacaataccg3600
    3541gacctcaagaagcgggtgggatccccctccgattgactttgtgccttcctctgttatggc3600
    ........................................ TK_PA_term..........
    ............................................................
    3601gaaggaacccgcgctatgacggcaataaaaagacagaataaaacgcacggtgttgggtcg3660
    3601cttccttgggcgcgatactgccgttatttttctgtcttattttgcgtgccacaacccagc3660
    .................... TK_PA_term..............................
    ............................................................
    3661tttgttcataaacgcggggttcggtcccagggctggcactctgtcgataccccaccgaga3720
    3661aaacaagtatttgcgccccaagccagggtcccgaccgtgagacagctatggggtggctct3720
    .................... TK_PA_term..............................
    ............................................................
    3721ccccattggggccaatacgcccgcgtttcttccttttccccaccccaccccccaagttcg3780
    3721ggggtaaccccggttatgcgggcgcaaagaaggaaaaggggtggggtggggggttcaagc3780
    .................... TK_PA_term..............................
    ............................................................
    3781ggtgaaggcccagggctcgcagccaacgtcggggcggcaggccctgccatagcctcaggt3840
    3781ccacttccgggtcccgagcgtcggttgcagccccgccgtccgggacggtatcggagtcca3840
    .................... TK_PA_term..............................
    ............................................................
    3841tactcatatatactttagattgatttaaaacttcatttttaatttaaaaggatctaggtg3900
    3841atgagtatatatgaaatctaactaaattttgaagtaaaaattaaattttcctagatccac3900
    ............................................................
    ............................................................
    3901aagatcctttttgataatctcatgaccaaaatcccttaacgtgagttttcgttccactga3960
    3901ttctaggaaaaactattagagtactggttttagggaattgcactcaaaagcaaggtgact3960
    ............................................................
    ............................................................
    3961gcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcctttttttctgcgcgta4020
    3961cgcagtctggggcatcttttctagtttcctagaagaactctaggaaaaaaagacgcgcat4020
    ............................ pBR322_origin..................
    ............................................................
    4021atctgctgcttgcaaacaaaaaaaccaccgctaccagcggtggtttgtttgccggatcaa4080
    4021tagacgacgaacgtttgtttttttggtggcgatggtcgccaccaaacaaacggcctagtt4080
    .................. pBR322_origin............................
    ............................................................
    4081gagctaccaactctttttccgaaggtaactggcttcagcagagcgcagataccaaatact4140
    4081ctcgatggttgagaaaaaggcttccattgaccgaagtcgtctcgcgtctatggtttatga4140
    .................. pBR322_origin............................
    ............................................................
    4141gtccttctagtgtagccgtagttaggccaccacttcaagaactctgtagcaccgcctaca4200
    4141caggaagatcacatcggcatcaatccggtggtgaagttcttgagacatcgtggcggatgt4200
    .................. pBR322_origin............................
    ............................................................
    4201tacctcgctctgctaatcctgttaccagtggctgctgccagtggcgataagtcgtgtctt4260
    4201atggagcgagacgattaggacaatggtcaccgacgacggtcaccgctattcagcacagaa4260
    .................. pBR322_origin............................
    ............................................................
    4261accgggttggactcaagacgatagttaccggataaggcgcagcggtcgggctgaacgggg4320
    4261tggcccaacctgagttctgctatcaatggcctattccgcgtcgccagcccgacttgcccc4320
    .................. pBR322_origin............................
    ............................................................
    4321ggttcgtgcacacagcccagcttggagcgaacgacctacaccgaactgagatacctacag4380
    4321ccaagcacgtgtgtcgggtcgaacctcgcttgctggatgtggcttgactctatggatgtc4380
    .................. pBR322_origin............................
    ............................................................
    4381cgtgagctatgagaaagcgccacgcttcccgaagggagaaaggcggacaggtatccggta4440
    4381gcactcgatactctttcgcggtgcgaagggcttccctctttccgcctgtccataggccat4440
    .................. pBR322_origin............................
    ............................................................
    4441agcggcagggtcggaacaggagagcgcacgagggagcttccagggggaaacgcctggtat4500
    4441tcgccgtcccagccttgtcctctcgcgtgctccctcgaaggtccccctttgcggaccata4500
    .................. pBR322_origin............................
    ............................................................
    4501ctttatagtcctgtcgggtttcgccacctctgacttgagcgtcgatttttgtgatgctcg4560
    4501gaaatatcaggacagcccaaagcggtggagactgaactcgcagctaaaaacactacgagc4560
    .................. pBR322_origin............................
    ............................................................
    4561tcaggggggcggagcctatggaaaaacgccagcaacgcggcctttttacggttcctggcc4620
    4561agtccccccgcctcggatacctttttgcggtcgttgcgccggaaaaatgccaaggaccgg4620
    ........ pBR322_origin......................................
    ............................................................
    4621ttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataac4680
    4621aaaacgaccggaaaacgagtgtacaagaaaggacgcaataggggactaagacacctattg4680
    ............................................................
    ............................................................
    4681cgtattaccgccatgcat..........................................4698
    4681gcataatggcggtacgta..........................................4698
    ............................................................

    References



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