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Sequence of pHcRed1-C1
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Sequence of pHcRed1-C1
: 4698 BP; 1117 A; 1276 C; 1251 G; 1054 T; 0 other; |
| AseI(7) | .......... | .......... | .......... | .......... | .......... |
| 1 | tagttattaa | tagtaatcaa | ttacggggtc | attagttcat | agcccatata | tggagttccg | 60 |
| 1 | atcaataatt | atcattagtt | aatgccccag | taatcaagta | tcgggtatat | acctcaaggc | 60 |
| .......... | .......... | ....... | CMV_immearly_pro | ....... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 61 | cgttacataa | cttacggtaa | atggcccgcc | tggctgaccg | cccaacgacc | <
font color="#000000" style="font-size:10px" face="Courier">cccgcccatt | 120 |
| 61 | gcaatgtatt | gaatgccatt | taccgggcgg | accgactggc | gggttgctgg | gggcgggtaa | 120 |
| .......... | ....... | CMV_immearly_pro | CAG_enh | ....... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 121 | gacgtcaata | atgacgtatg | ttcccatagt | aacgccaata | gggactttcc |
attgacgtca | 180 |
| 121 | ctgcagttat | tactgcatac | aagggtatca | ttgcggttat | ccctgaaagg | taactgcagt | 180 |
| .......... | ... | CAG_enh CMV_immearly_pro | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | NdeI(234) |
| 181 | atgggtggag | tatttacggt | aaactgccca | cttggcagta | catcaagtgt |
atcatatgcc | 240 |
| 181 | tacccacctc | ataaatgcca | tttgacgggt | gaaccgtcat | gtagttcaca | tagtatacgg | 240 |
| .......... | ... | CAG_enh CMV_immearly_pro | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 241 | aagtacgccc | cctattgacg | tcaatgacgg | taaatggccc | gcctggcatt |
atgcccagta | 300 |
| 241 | ttcatgcggg | ggataactgc | agttactgcc | atttaccggg | cggaccgtaa | tacgggtcat | 300 |
| .......... | ... | CAG_enh CMV_immearly_pro | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 301 | catgacctta | tgggactttc | ctacttggca | gtacatctac | gtattagtca |
tcgctattac | 360 |
| 301 | gtactggaat | accctgaaag | gatgaaccgt | catgtagatg | cataatcagt | agcgataatg | 360 |
| .......... | ... | CAG_enh CMV_immearly_pro | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 361 | catggtgatg | cggttttggc | agtacatcaa | tgggcgtgga | tagcggtttg | actcacgggg | 420 |
| 361 | gtaccactac | gccaaaaccg | tcatgtagtt | acccgcacct | atcgccaaac | tgagtgcccc | 420 |
| .......... | ....... | CMV_immearly_pro | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 421 | atttccaagt | ctccacccca | ttgacgtcaa | tgggagtttg | ttttggcacc | aaaatcaacg | 480 |
| 421 | taaaggttca | gaggtggggt | aactgcagtt | accctcaaac | aaaaccgtgg | ttttagttgc | 480 |
| .......... | ....... | CMV_immearly_pro | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 481 | ggactttcca | aaatgtcgta | acaactccgc | cccattgacg | caaatgggcg | gtaggcgtgt | 540 |
| 481 | cctgaaaggt | tttacagcat | tgttgaggcg | gggtaactgc | gtttacccgc | catccgcaca | 540 |
| .......... | ....... | CMV_immearly_pro | .. | CMV_fwd_pri CMV_pro | ..... |
| .......... | .......... | .......... | .......... | ..... | NheI(591) AgeI(600) |
| 541 | acggtgggag | gtctatataa | gcagagctgg | tttagtgaac | cgtcagatcc | gctagcgcta | 600 |
| 541 | tgccaccctc | cagatatatt | cgtctcgacc | aaatcacttg | gcagtctagg | cgatcgcgat | 600 |
| ....... | CMV_immearly_pro | CMV_pro | ....... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 601 | ccggtcgcca | ccatggtgag | cggcctgctg | aaggagagta | tgcgcatcaa | gatgtacatg | 660 |
| 601 | ggccagcggt | ggtaccactc | gccggacgac | ttcctctcat | acgcgtagtt | ctacatgtac | 660 |
| .......... | .......... | ORF 1 | ORF 1 | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 661 | gagggcaccg | tgaacggcca | ctacttcaag | tgcgagggcg | agggcgacgg | caaccccttc | 720 |
| 661 | ctcccgtggc | acttgccggt | gatgaagttc | acgctcccgc | tcccgctgcc | gttggggaag | 720 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | PmlI(747) | .......... | .......... | .......... |
| 721 | gccggcaccc | agagcatgag | aatccacgtg | accgagggcg | cccccctgcc | cttcgccttc | 780 |
| 721 | cggccgtggg | tctcgtactc | ttaggtgcac | tggctcccgc | ggggggacgg | gaagcggaag | 780 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 781 | gacatcctgg | ccccctgctg | cgagtacggc | agcaggacct | tcgtgcacca | caccgccgag | 840 |
| 781 | ctgtaggacc | gggggacgac | gctcatgccg | tcgtcctgga | agcacgtggt | gtggcggctc | 840 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 841 | atccccgact | tcttcaagca | gagcttcccc | gagggcttca | cctgggagag | aaccaccacc | 900 |
| 841 | taggggctga | agaagttcgt | ctcgaagggg | ctcccgaagt | ggaccctctc | ttggtggtgg | 900 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 901 | tacgaggacg | gcggcatcct | gaccgcccac | caggacacca | gcctggaggg | caactgcctg | 960 |
| 901 | atgctcctgc | cgccgtagga | ctggcgggtg | gtcctgtggt | cggacctccc | gttgacggac | 960 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 961 | atctacaagg | tgaaggtgca | cggcaccaac | ttccccgccg | acggccccgt | gatgaagaac | 1020 |
| 961 | tagatgttcc | acttccacgt | gccgtggttg | aaggggcggc | tgccggggca | ctacttcttg | 1020 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1021 | aagagcggcg | gctgggagcc | cagcaccgag | gtggtgtacc | ccgagaacgg | cgtgctgtgc | 1080 |
| 1021 | ttctcgccgc | cgaccctcgg | gtcgtggctc | caccacatgg | ggctcttgcc | gcacgacacg | 1080 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1081 | ggccggaacg | tgatggccct | gaaggtgggc | gaccggcacc | tgatctgcca | ccactacacc | 1140 |
| 1081 | ccggccttgc | actaccggga | cttccacccg | ctggccgtgg | actagacggt | ggtgatgtgg | 1140 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1141 | agctaccgga | gcaagaaggc | cgtgcgcgcc | ctgaccatgc | ccggcttcca | cttcaccgac | 1200 |
| 1141 | tcgatggcct | cgttcttccg | gcacgcgcgg | gactggtacg | ggccgaaggt | gaagtggctg | 1200 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1201 | atccggctcc | agatgctgcg | gaagaagaag | gacgagtact | tcgagctgta | cgaggccagc | 1260 |
| 1201 | taggccgagg | tctacgacgc | cttcttcttc | ctgctcatga | agctcgacat | gctccggtcg | 1260 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .... | BglII(1306),XhoI(1310) | .... |
| 1261 | gtggcccggt | acagcgacct | gcccgagaag | gccaactccg | gactcagatc | tcgagctcaa | 1320 |
| 1261 | caccgggcca | tgtcgctgga | cgggctcttc | cggttgaggc | ctgagtctag | agctcgagtt | 1320 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| EcoRI | PstI,SalI | | KpnI,SacII,ApaI,SmaI,BamHI | XbaI | BclI |
| 1321 | gcttcgaatt | ctgcagtcga | cggtaccgcg | ggcccgggat | ccaccggatc | tagataactg | 1380 |
| 1321 | cgaagcttaa | gacgtcagct | gccatggcgc | ccgggcccta | ggtggcctag | atctattgac | 1380 |
| .......... | ......... | ORF 1 ORF 1 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1381 | atcataatca | gccataccac | atttgtagag | gttttacttg | ctttaaaaaa | cctcccacac | 1440 |
| 1381 | tagtattagt | cggtatggtg | taaacatctc | caaaatgaac | gaaatttttt | ggagggtgtg | 1440 |
| ORF 1 | ......... | SV40_PA_term | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | HpaI(1485) | .......... |
| 1441 | ctccccctga | acctgaaaca | taaaatgaat | gcaattgttg | ttgttaactt | gtttattgca | 1500 |
| 1441 | gagggggact | tggactttgt | attttactta | cgttaacaac | aacaattgaa | caaataacgt | 1500 |
| .......... | ......... | SV40_PA_term | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1501 | gcttataatg | gttacaaata | aagcaatagc | atcacaaatt | tcacaaataa | agcatttttt | 1560 |
| 1501 | cgaatattac | caatgtttat | ttcgttatcg | tagtgtttaa | agtgtttatt | tcgtaaaaaa | 1560 |
| .......... | ......... | SV40_PA_term | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1561 | tcactgcatt | ctagttgtgg | tttgtccaaa | ctcatcaatg | tatcttaacg | cgtaaattgt | 1620 |
| 1561 | agtgacgtaa | gatcaacacc | aaacaggttt | gagtagttac | atagaattgc | gcatttaaca | 1620 |
| .......... | ... | SV40_PA_term EBV_rev_pri | ... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1621 | aagcgttaat | attttgttaa | aattcgcgtt | aaatttttgt | taaatcagct | cattttttaa | 1680 |
| 1621 | ttcgcaatta | taaaacaatt | ttaagcgcaa | tttaaaaaca | atttagtcga | gtaaaaaatt | 1680 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1681 | ccaataggcc | gaaatcggca | aaatccctta | taaatcaaaa | gaatagaccg | agatagggtt | 1740 |
| 1681 | ggttatccgg | ctttagccgt | tttagggaat | atttagtttt | cttatctggc | tctatcccaa | 1740 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1741 | gagtgttgtt | ccagtttgga | acaagagtcc | actattaaag | aacgtggact | ccaacgtcaa | 1800 |
| 1741 | ctcacaacaa | ggtcaaacct | tgttctcagg | tgataatttc | ttgcacctga | ggttgcagtt | 1800 |
| .......... | .......... | .......... | f1_origin | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1801 | agggcgaaaa | accgtctatc | agggcgatgg | cccactacgt | gaaccatcac | cctaatcaag | 1860 |
| 1801 | tcccgctttt | tggcagatag | tcccgctacc | gggtgatgca | cttggtagtg | ggattagttc | 1860 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1861 | ttttttgggg | tcgaggtgcc | gtaaagcact | aaatcggaac | cctaaaggga | gcccccgatt | 1920 |
| 1861 | aaaaaacccc | agctccacgg | catttcgtga | tttagccttg | ggatttccct | cgggggctaa | 1920 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1921 | tagagcttga | cggggaaagc | cggcgaacgt | ggcgagaaag | gaagggaaga | aagcgaaagg | 1980 |
| 1921 | atctcgaact | gcccctttcg | gccgcttgca | ccgctctttc | cttcccttct | ttcgctttcc | 1980 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1981 | agcgggcgct | agggcgctgg | caagtgtagc | ggtcacgctg | cgcgtaacca | ccacacccgc | 2040 |
| 1981 | tcgcccgcga | tcccgcgacc | gttcacatcg | ccagtgcgac | gcgcattggt | ggtgtgggcg | 2040 |
| .......... | .......... | f1_origin | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2041 | cgcgcttaat | gcgccgctac | agggcgcgtc | aggtggcact | tttcggggaa | atgtgcgcgg | 2100 |
| 2041 | gcgcgaatta | cgcggcgatg | tcccgcgcag | tccaccgtga | aaagcccctt | tacacgcgcc | 2100 |
| f1_origin | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2101 | aacccctatt | tgtttatttt | tctaaataca | ttcaaatatg | tatccgctca | tgagacaata | 2160 |
| 2101 | ttggggataa | acaaataaaa | agatttatgt | aagtttatac | ataggcgagt | actctgttat | 2160 |
| .......... | .......... | .......... | .......... | AmpR_pro | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2161 | accctgataa | atgcttcaat | aatattgaaa | aaggaagagt | cctgaggcgg | aaagaaccag | 2220 |
| 2161 | tgggactatt | tacgaagtta | ttataacttt | ttccttctca | ggactccgcc | tttcttggtc | 2220 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2221 | ctgtggaatg | tgtgtcagtt | agggtgtgga | aagtccccag | gctccccagc | aggcagaagt | 2280 |
| 2221 | gacaccttac | acacagtcaa | tcccacacct | ttcaggggtc | cgaggggtcg | tccgtcttca | 2280 |
| ......... | pBABE_3_pri | ......... | SV40_enh | SV40_pro | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2281 | atgcaaagca | tgcatctcaa | ttagtcagca | accaggtgtg | gaaagtcccc | aggctcccca | 2340 |
| 2281 | tacgtttcgt | acgtagagtt | aatcagtcgt | tggtccacac | ctttcagggg | tccgaggggt | 2340 |
| .......... | ...... | SV40_enh SV40_pro | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2341 | gcaggcagaa | gtatgcaaag | catgcatctc | aattagtcag | caaccatagt | cccgccccta | 2400 |
| 2341 | cgtccgtctt | catacgtttc | gtacgtagag | ttaatcagtc | gttggtatca | gggcggggat | 2400 |
| .......... | ...... | SV40_enh SV40_pro | ...... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2401 | actccgccca | tcccgcccct | aactccgccc | agttccgccc | attctccgcc | ccatggctga | 2460 |
| 2401 | tgaggcgggt | agggcgggga | ttgaggcggg | tcaaggcggg | taagaggcgg | ggtaccgact | 2460 |
| .......... | ..... | SV40_enh SV40_pro | SV40_origin | ..... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2461 | ctaatttttt | ttatttatgc | agaggccgag | gccgcctcgg | cctctgagct | attccagaag | 2520 |
| 2461 | gattaaaaaa | aataaatacg | tctccggctc | cggcggagcc | ggagactcga | taaggtcttc | 2520 |
| ... | SV40_origin | SV40_pro SV40pro_F_pri | ... | .......... | .......... |
| .......... | .......... | StuI(2543) | .......... | ClaI(2562) | .......... |
| 2521 | tagtgaggag | gcttttttgg | aggcctaggc | ttttgcaaag | atcgatcaag | agacaggatg | 2580 |
| 2521 | atcactcctc | cgaaaaaacc | tccggatccg | aaaacgtttc | tagctagttc | tctgtcctac | 2580 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2581 | aggatcgttt | cgcatgattg | aacaagatgg | attgcacgca | ggttctccgg | ccgcttgggt | 2640 |
| 2581 | tcctagcaaa | gcgtactaac | ttgttctacc | taacgtgcgt | ccaagaggcc | ggcgaaccca | 2640 |
| .......... | .......... | ........ | ORF 2 Neomycin | ........ | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2641 | ggagaggcta | ttcggctatg | actgggcaca | acagacaatc | ggctgctctg | atgccgccgt | 2700 |
| 2641 | cctctccgat | aagccgatac | tgacccgtgt | tgtctgttag | ccgacgagac | tacggcggca | 2700 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2701 | gttccggctg | tcagcgcagg | ggcgcccggt | tctttttgtc | aagaccgacc | tgtccggtgc | 2760 |
| 2701 | caaggccgac | agtcgcgtcc | ccgcgggcca | agaaaaacag | ttctggctgg | acaggccacg | 2760 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | MscI(2804) | .......... |
| 2761 | cctgaatgaa | ctgcaagacg | aggcagcgcg | gctatcgtgg | ctggccacga | cgggcgttcc | 2820 |
| 2761 | ggacttactt | gacgttctgc | tccgtcgcgc | cgatagcacc | gaccggtgct | gcccgcaagg | 2820 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2821 | ttgcgcagct | gtgctcgacg | ttgtcactga | agcgggaagg | gactggctgc | tattgggcga | 2880 |
| 2821 | aacgcgtcga | cacgagctgc | aacagtgact | tcgcccttcc | ctgaccgacg | ataacccgct | 2880 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2881 | agtgccgggg | caggatctcc | tgtcatctca | ccttgctcct | gccgagaaag | tatccatcat | 2940 |
| 2881 | tcacggcccc | gtcctagagg | acagtagagt | ggaacgagga | cggctctttc | ataggtagta | 2940 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2941 | ggctgatgca | atgcggcggc | tgcatacgct | tgatccggct | acctgcccat | tcgaccacca | 3000 |
| 2941 | ccgactacgt | tacgccgccg | acgtatgcga | actaggccga | tggacgggta | agctggtggt | 3000 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3001 | agcgaaacat | cgcatcgagc | gagcacgtac | tcggatggaa | gccggtcttg | tcgatcagga | 3060 |
| 3001 | tcgctttgta | gcgtagctcg | ctcgtgcatg | agcctacctt | cggccagaac | agctagtcct | 3060 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3061 | tgatctggac | gaagagcatc | aggggctcgc | gccagccgaa | ctgttcgcca | ggctcaaggc | 3120 |
| 3061 | actagacctg | cttctcgtag | tccccgagcg | cggtcggctt | gacaagcggt | ccgagttccg | 3120 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3121 | gagcatgccc | gacggcgagg | atctcgtcgt | gacccatggc | gatgcctgct | tgccgaatat | 3180 |
| 3121 | ctcgtacggg | ctgccgctcc | tagagcagca | ctgggtaccg | ctacggacga | acggcttata | 3180 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3181 | catggtggaa | aatggccgct | tttctggatt | catcgactgt | ggccggctgg | gtgtggcgga | 3240 |
| 3181 | gtaccacctt | ttaccggcga | aaagacctaa | gtagctgaca | ccggccgacc | cacaccgcct | 3240 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3241 | ccgctatcag | gacatagcgt | tggctacccg | tgatattgct | gaagagcttg | gcggcgaatg | 3300 |
| 3241 | ggcgatagtc | ctgtatcgca | accgatgggc | actataacga | cttctcgaac | cgccgcttac | 3300 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3301 | ggctgaccgc | ttcctcgtgc | tttacggtat | cgccgctccc | gattcgcagc | gcatcgcctt | 3360 |
| 3301 | ccgactggcg | aaggagcacg | aaatgccata | gcggcgaggg | ctaagcgtcg | cgtagcggaa | 3360 |
| .......... | ........ | ORF 2 Neomycin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3361 | ctatcgcctt | cttgacgagt | tcttctgagc | gggactctgg | ggttcgaaat | gaccgaccaa | 3420 |
| 3361 | gatagcggaa | gaactgctca | agaagactcg | ccctgagacc | ccaagcttta | ctggctggtt | 3420 |
| ........ | ORF 2 Neomycin | ........ | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3421 | gcgacgccca | acctgccatc | acgagatttc | gattccaccg | ccgccttcta | tgaaaggttg | 3480 |
| 3421 | cgctgcgggt | tggacggtag | tgctctaaag | ctaaggtggc | ggcggaagat | actttccaac | 3480 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3481 | ggcttcggaa | tcgttttccg | ggacgccggc | tggatgatcc | tccagcgcgg | ggatctcatg | 3540 |
| 3481 | ccgaagcctt | agcaaaaggc | cctgcggccg | acctactagg | aggtcgcgcc | cctagagtac | 3540 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3541 | ctggagttct | tcgcccaccc | tagggggagg | ctaactgaaa | cacggaagga | gacaataccg | 3600 |
| 3541 | gacctcaaga | agcgggtggg | atccccctcc | gattgacttt | gtgccttcct | ctgttatggc | 3600 |
| .......... | .......... | .......... | .......... | TK_PA_term | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3601 | gaaggaaccc | gcgctatgac | ggcaataaaa | agacagaata | aaacgcacgg | tgttgggtcg | 3660 |
| 3601 | cttccttggg | cgcgatactg | ccgttatttt | tctgtcttat | tttgcgtgcc | acaacccagc | 3660 |
| .......... | .......... | TK_PA_term | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3661 | tttgttcata | aacgcggggt | tcggtcccag | ggctggcact | ctgtcgatac | cccaccgaga | 3720 |
| 3661 | aaacaagtat | ttgcgcccca | agccagggtc | ccgaccgtga | gacagctatg | gggtggctct | 3720 |
| .......... | .......... | TK_PA_term | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3721 | ccccattggg | gccaatacgc | ccgcgtttct | tccttttccc | caccccaccc | cccaagttcg | 3780 |
| 3721 | ggggtaaccc | cggttatgcg | ggcgcaaaga | aggaaaaggg | gtggggtggg | gggttcaagc | 3780 |
| .......... | .......... | TK_PA_term | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3781 | ggtgaaggcc | cagggctcgc | agccaacgtc | ggggcggcag | gccctgccat | agcctcaggt | 3840 |
| 3781 | ccacttccgg | gtcccgagcg | tcggttgcag | ccccgccgtc | cgggacggta | tcggagtcca | 3840 |
| .......... | .......... | TK_PA_term | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3841 | tactcatata | tactttagat | tgatttaaaa | cttcattttt | aatttaaaag | gatctaggtg | 3900 |
| 3841 | atgagtatat | atgaaatcta | actaaatttt | gaagtaaaaa | ttaaattttc | ctagatccac | 3900 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3901 | aagatccttt | ttgataatct | catgaccaaa | atcccttaac | gtgagttttc | gttccactga | 3960 |
| 3901 | ttctaggaaa | aactattaga | gtactggttt | tagggaattg | cactcaaaag | caaggtgact | 3960 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3961 | gcgtcagacc | ccgtagaaaa | gatcaaagga | tcttcttgag | atcctttttt | tctgcgcgta | 4020 |
| 3961 | cgcagtctgg | ggcatctttt | ctagtttcct | agaagaactc | taggaaaaaa | agacgcgcat | 4020 |
| .......... | .......... | ........ | pBR322_origin | ........ | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4021 | atctgctgct | tgcaaacaaa | aaaaccaccg | ctaccagcgg | tggtttgttt | gccggatcaa | 4080 |
| 4021 | tagacgacga | acgtttgttt | ttttggtggc | gatggtcgcc | accaaacaaa | cggcctagtt | 4080 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4081 | gagctaccaa | ctctttttcc | gaaggtaact | ggcttcagca | gagcgcagat | accaaatact | 4140 |
| 4081 | ctcgatggtt | gagaaaaagg | cttccattga | ccgaagtcgt | ctcgcgtcta | tggtttatga | 4140 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4141 | gtccttctag | tgtagccgta | gttaggccac | cacttcaaga | actctgtagc | accgcctaca | 4200 |
| 4141 | caggaagatc | acatcggcat | caatccggtg | gtgaagttct | tgagacatcg | tggcggatgt | 4200 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4201 | tacctcgctc | tgctaatcct | gttaccagtg | gctgctgcca | gtggcgataa | gtcgtgtctt | 4260 |
| 4201 | atggagcgag | acgattagga | caatggtcac | cgacgacggt | caccgctatt | cagcacagaa | 4260 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4261 | accgggttgg | actcaagacg | atagttaccg | gataaggcgc | agcggtcggg | ctgaacgggg | 4320 |
| 4261 | tggcccaacc | tgagttctgc | tatcaatggc | ctattccgcg | tcgccagccc | gacttgcccc | 4320 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4321 | ggttcgtgca | cacagcccag | cttggagcga | acgacctaca | ccgaactgag | atacctacag | 4380 |
| 4321 | ccaagcacgt | gtgtcgggtc | gaacctcgct | tgctggatgt | ggcttgactc | tatggatgtc | 4380 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4381 | cgtgagctat | gagaaagcgc | cacgcttccc | gaagggagaa | aggcggacag | gtatccggta | 4440 |
| 4381 | gcactcgata | ctctttcgcg | gtgcgaaggg | cttccctctt | tccgcctgtc | cataggccat | 4440 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4441 | agcggcaggg | tcggaacagg | agagcgcacg | agggagcttc | cagggggaaa | cgcctggtat | 4500 |
| 4441 | tcgccgtccc | agccttgtcc | tctcgcgtgc | tccctcgaag | gtcccccttt | gcggaccata | 4500 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4501 | ctttatagtc | ctgtcgggtt | tcgccacctc | tgacttgagc | gtcgattttt | gtgatgctcg | 4560 |
| 4501 | gaaatatcag | gacagcccaa | agcggtggag | actgaactcg | cagctaaaaa | cactacgagc | 4560 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4561 | tcaggggggc | ggagcctatg | gaaaaacgcc | agcaacgcgg | cctttttacg | gttcctggcc | 4620 |
| 4561 | agtccccccg | cctcggatac | ctttttgcgg | tcgttgcgcc | ggaaaaatgc | caaggaccgg | 4620 |
| ........ | pBR322_origin | ........ | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4621 | ttttgctggc | cttttgctca | catgttcttt | cctgcgttat | cccctgattc | tgtggataac | 4680 |
| 4621 | aaaacgaccg | gaaaacgagt | gtacaagaaa | ggacgcaata | ggggactaag | acacctattg | 4680 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4681 | cgtattaccg | ccatgcat.. | .......... | .......... | .......... | .......... | 4698 |
| 4681 | gcataatggc | ggtacgta.. | .......... | .......... | .......... | .......... | 4698 |
| .......... | .......... | .......... | .......... | .......... | .......... |
References
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