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This sequnce graph is created using BVTech Plasmid, which is DNA sequence analysis and plasmid drawing software for Windows PCs.You can
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Sequence of pPacPL
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and then use BVTech Plasmid to view and edit the file.
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View the plasmid map on line
Sequence of pPacPL: 6387 BP; 1795 A; 1484 C; 1437 G; 1666 T; 5 other; |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1 | ggcactggcc | gtcgttttac | aacgtcgtga | ctgggaaaac | cctggcgtta | cccaacttaa | 60 |
| 1 | ccgtgaccgg | cagcaaaatg | ttgcagcact | gacccttttg | ggaccgcaat | gggttgaatt | 60 |
| . | M13_forward20_primer | M13_pUC_fwd_primer | lacZ_a | . | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 61 | tcgccttgca | gcacatcccc | ctttcgccag | ctggcgtaat | agcgaagagg | cccgcaccga | 120 |
| 61 | agcggaacgt | cgtgtagggg | gaaagcggtc | gaccgcatta | tcgcttctcc | gggcgtggct | 120 |
| .......... | .......... | lacZ_a | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 121 | tcgcccttcc | caacagttgc | gcagcctgaa | tggcgaatgg | cgcctgatgc | ggtattttct | 180 |
| 121 | agcgggaagg | gttgtcaacg | cgtcggactt | accgcttacc | gcggactacg | ccataaaaga | 180 |
| .......... | lacZ_a | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 181 | ccttacgcat | ctgtgcggta | tttcacaccg | catatggtgc | actctcagta | caatctgctc | 240 |
| 181 | ggaatgcgta | gacacgccat | aaagtgtggc | gtataccacg | tgagagtcat | gttagacgag | 240 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 241 | tgatgccgca | tagttaagcc | agccccgaca | cccgccaaca | cccgctgacg | cgccctgacg | 300 |
| 241 | actacggcgt | atcaattcgg | tcggggctgt | gggcggttgt | gggcgactgc | gcgggactgc | 300 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 301 | ggcttgtctg | ctcccggcat | ccgcttacag | acaagctgtg | accgtctccg | ggagctgcat | 360 |
| 301 | ccgaacagac | gagggccgta | ggcgaatgtc | tgttcgacac | tggcagaggc | cctcgacgta | 360 |
| .......... | .......... | .......... | .......... | ........ | pGEX_3_primer |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 361 | gtgtcagagg | ttttcaccgt | catcaccgaa | acgcgcgaga | cgaaagggcc | tcgtgatacg | 420 |
| 361 | cacagtctcc | aaaagtggca | gtagtggctt | tgcgcgctct | gctttcccgg | agcactatgc | 420 |
| pGEX_3_primer | ...... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 421 | cctattttta | taggttaatg | tcatgataat | aatggtttct | tagacgtcag | gtggcacttt | 480 |
| 421 | ggataaaaat | atccaattac | agtactatta | ttaccaaaga | atctgcagtc | caccgtgaaa | 480 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 481 | tcggggaaat | gtgcgcggaa | cccctatttg | tttatttttc | taaatacatt | caaatatgta | 540 |
| 481 | agccccttta | cacgcgcctt | ggggataaac | aaataaaaag | atttatgtaa | gtttatacat | 540 |
| .......... | .......... | .......... | .......... | ........ | AmpR_promoter |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 541 | tccgctcatg | agacaataac | cctgataaat | gcttcaataa | tattgaaaaa | ggaagagtat | 600 |
| 541 | aggcgagtac | tctgttattg | ggactattta | cgaagttatt | ataacttttt | ccttctcata | 600 |
| AmpR_promoter | ...... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 601 | gagtattcaa | catttccgtg | tcgcccttat | tccctttttt | gcggcatttt |
gccttcctgt | 660 |
| 601 | ctcataagtt | gtaaaggcac | agcgggaata | agggaaaaaa | cgccgtaaaa | cggaaggaca | 660 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 661 | ttttgctcac | ccagaaacgc | tggtgaaagt | aaaagatgct | gaagatcagt |
tgggtgcacg | 720 |
| 661 | aaaacgagtg | ggtctttgcg | accactttca | ttttctacga | cttctagtca | acccacgtgc | 720 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 721 | agtgggttac | atcgaactgg | atctcaacag | cggtaagatc | cttgagagtt |
ttcgccccga | 780 |
| 721 | tcacccaatg | tagcttgacc | tagagttgtc | gccattctag | gaactctcaa | aagcggggct | 780 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 781 | agaacgtttt | ccaatgatga | gcacttttaa | agttctgcta | tgtggcgcgg |
tattatcccg | 840 |
| 781 | tcttgcaaaa | ggttactact | cgtgaaaatt | tcaagacgat | acaccgcgcc | ataatagggc | 840 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 841 | tattgacgcc | gggcaagagc | aactcggtcg | ccgcatacac | tattctcaga |
atgacttggt | 900 |
| 841 | ataactgcgg | cccgttctcg | ttgagccagc | ggcgtatgtg | ataagagtct | tactgaacca | 900 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 901 | tgagtactca | ccagtcacag | aaaagcatct | tacggatggc | atgacagtaa |
gagaattatg | 960 |
| 901 | actcatgagt | ggtcagtgtc | ttttcgtaga | atgcctaccg | tactgtcatt | ctcttaatac | 960 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 961 | cagtgctgcc | ataaccatga | gtgataacac | tgcggccaac | ttacttctga |
caacgatcgg | 1020 |
| 961 | gtcacgacgg | tattggtact | cactattgtg | acgccggttg | aatgaagact | gttgctagcc | 1020 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1021 | aggaccgaag | gagctaaccg | cttttttgca | caacatgggg | gatcatgtaa | ctcgccttga | 1080 |
| 1021 | tcctggcttc | ctcgattggc | gaaaaaacgt | gttgtacccc | ctagtacatt | gagcggaact | 1080 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1081 | tcgttgggaa | ccggagctga | atgaagccat | accaaacgac | gagcgtgaca | ccacgatgcc | 1140 |
| 1081 | agcaaccctt | ggcctcgact | tacttcggta | tggtttgctg | ctcgcactgt | ggtgctacgg | 1140 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1141 | tgtagcaatg | gcaacaacgt | tgcgcaaact | attaactggc | gaactactta | ctctagcttc | 1200 |
| 1141 | acatcgttac | cgttgttgca | acgcgtttga | taattgaccg | cttgatgaat | gagatcgaag | 1200 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1201 | ccggcaacaa | ttaatagact | ggatggaggc | ggataaagtt | gcaggaccac | ttctgcgctc | 1260 |
| 1201 | ggccgttgtt | aattatctga | cctacctccg | cctatttcaa | cgtcctggtg | aagacgcgag | 1260 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1261 | ggcccttccg | gctggctggt | ttattgctga | taaatctgga | gccggtgagc | gtgggtctcg | 1320 |
| 1261 | ccgggaaggc | cgaccgacca | aataacgact | atttagacct | cggccactcg | cacccagagc | 1320 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1321 | cggtatcatt | gcagcactgg | ggccagatgg | taagccctcc | cgtatcgtag | ttatctacac | 1380 |
| 1321 | gccatagtaa | cgtcgtgacc | ccggtctacc | attcgggagg | gcatagcatc | aatagatgtg | 1380 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1381 | gacggggagt | caggcaacta | tggatgaacg | aaatagacag | atcgctgaga | taggtgcctc | 1440 |
| 1381 | ctgcccctca | gtccgttgat | acctacttgc | tttatctgtc | tagcgactct | atccacggag | 1440 |
| .......... | .... | Orf frame 2 Ampicillin | .... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1441 | actgattaag | cattggtaac | tgtcagacca | agtttactca | tatatacttt | agattgattt | 1500 |
| 1441 | tgactaattc | gtaaccattg | acagtctggt | tcaaatgagt | atatatgaaa | tctaactaaa | 1500 |
| Orf frame 2 Ampicillin | | ........ | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1501 | aaaacttcat | ttttaattta | aaaggatcta | ggtgaagatc | ctttttgata | atctcatgac | 1560 |
| 1501 | ttttgaagta | aaaattaaat | tttcctagat | ccacttctag | gaaaaactat | tagagtactg | 1560 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1561 | caaaatccct | taacgtgagt | tttcgttcca | ctgagcgtca | gaccccgtag | aaaagatcaa | 1620 |
| 1561 | gttttaggga | attgcactca | aaagcaaggt | gactcgcagt | ctggggcatc | ttttctagtt | 1620 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1621 | aggatcttct | tgagatcctt | tttttctgcg | cgtaatctgc | tgcttgcaaa | caaaaaaacc | 1680 |
| 1621 | tcctagaaga | actctaggaa | aaaaagacgc | gcattagacg | acgaacgttt | gtttttttgg | 1680 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1681 | accgctacca | gcggtggttt | gtttgccgga | tcaagagcta | ccaactcttt | ttccgaaggt | 1740 |
| 1681 | tggcgatggt | cgccaccaaa | caaacggcct | agttctcgat | ggttgagaaa | aaggcttcca | 1740 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1741 | aactggcttc | agcagagcgc | agataccaaa | tactgtcctt | ctagtgtagc | cgtagttagg | 1800 |
| 1741 | ttgaccgaag | tcgtctcgcg | tctatggttt | atgacaggaa | gatcacatcg | gcatcaatcc | 1800 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1801 | ccaccacttc | aagaactctg | tagcaccgcc | tacatacctc | gctctgctaa | tcctgttacc | 1860 |
| 1801 | ggtggtgaag | ttcttgagac | atcgtggcgg | atgtatggag | cgagacgatt | aggacaatgg | 1860 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1861 | agtggctgct | gccagtggcg | ataagtcgtg | tcttaccggg | ttggactcaa | gacgatagtt | 1920 |
| 1861 | tcaccgacga | cggtcaccgc | tattcagcac | agaatggccc | aacctgagtt | ctgctatcaa | 1920 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1921 | accggataag | gcgcagcggt | cgggctgaac | ggggggttcg | tgcacacagc | ccagcttgga | 1980 |
| 1921 | tggcctattc | cgcgtcgcca | gcccgacttg | ccccccaagc | acgtgtgtcg | ggtcgaacct | 1980 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 1981 | gcgaacgacc | tacaccgaac | tgagatacct | acagcgtgag | ctatgagaaa | gcgccacgct | 2040 |
| 1981 | cgcttgctgg | atgtggcttg | actctatgga | tgtcgcactc | gatactcttt | cgcggtgcga | 2040 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2041 | tcccgaaggg | agaaaggcgg | acaggtatcc | ggtaagcggc | agggtcggaa | caggagagcg | 2100 |
| 2041 | agggcttccc | tctttccgcc | tgtccatagg | ccattcgccg | tcccagcctt | gtcctctcgc | 2100 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2101 | cacgagggag | cttccagggg | gaaacgcctg | gtatctttat | agtcctgtcg | ggtttcgcca | 2160 |
| 2101 | gtgctccctc | gaaggtcccc | ctttgcggac | catagaaata | tcaggacagc | ccaaagcggt | 2160 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2161 | cctctgactt | gagcgtcgat | ttttgtgatg | ctcgtcaggg | gggcggagcc | tatggaaaaa | 2220 |
| 2161 | ggagactgaa | ctcgcagcta | aaaacactac | gagcagtccc | cccgcctcgg | ataccttttt | 2220 |
| .......... | ........ | pBR322_origin | ........ | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2221 | cgccagcaac | gcggcctttt | tacggttcct | ggccttttgc | tggccttttg | ctcacatgtt | 2280 |
| 2221 | gcggtcgttg | cgccggaaaa | atgccaagga | ccggaaaacg | accggaaaac | gagtgtacaa | 2280 |
| pBR322_origin | ...... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2281 | ctttcctgcg | ttatcccctg | attctgtgga | taaccgtatt | accgcctttg | agtgagctga | 2340 |
| 2281 | gaaaggacgc | aataggggac | taagacacct | attggcataa | tggcggaaac | tcactcgact | 2340 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2341 | taccgctcgc | cgcagccgaa | cgaccgagcg | cagcgagtca | gtgagcgagg | aagcggaaga | 2400 |
| 2341 | atggcgagcg | gcgtcggctt | gctggctcgc | gtcgctcagt | cactcgctcc | ttcgccttct | 2400 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2401 | gcgcccaata | cgcaaaccgc | ctctccccgc | gcgttggccg | attcattaat | gcagctggca | 2460 |
| 2401 | cgcgggttat | gcgtttggcg | gagaggggcg | cgcaaccggc | taagtaatta | cgtcgaccgt | 2460 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2461 | cgacaggttt | cccgactgga | aagcgggcag | tgagcgcaac | gcaattaatg | tgagttagct | 2520 |
| 2461 | gctgtccaaa | gggctgacct | ttcgcccgtc | actcgcgttg | cgttaattac | actcaatcga | 2520 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2521 | cactcattag | gcaccccagg | ctttacactt | tatgcttccg | gctcgtatgt | tgtgtggaat | 2580 |
| 2521 | gtgagtaatc | cgtggggtcc | gaaatgtgaa | atacgaaggc | cgagcataca | acacacctta | 2580 |
| .......... | .......... | ......... | lac_promoter | ......... | .......... |
| .......... | .......... | .......... | ......... | EcoRI(2630) | ......... |
| 2581 | tgtgagcgga | taacaatttc | acacaggaaa | cagctatgac | catgattacg | aattcnnnnn | 2640 |
| 2581 | acactcgcct | attgttaaag | tgtgtccttt | gtcgatactg | gtactaatgc | ttaagnnnnn | 2640 |
| ...... | M13_pUC_rev_primer | .. | M13_reverse_primer | ...... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2641 | taaaaaaaaa | tcatgaatgg | catcaactct | gaatcaaatc | tttgcagatg | cacctacttc | 2700 |
| 2641 | attttttttt | agtacttacc | gtagttgaga | cttagtttag | aaacgtctac | gtggatgaag | 2700 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | ......... | BglII(2728) | ......... | .......... | .......... |
| 2701 | tcatttccac | tgtcacatca | tttttccaga | tctcgctgcc | tgttatgtgg | cccacaaacc | 2760 |
| 2701 | agtaaaggtg | acagtgtagt | aaaaaggtct | agagcgacgg | acaatacacc | gggtgtttgg | 2760 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2761 | aagacacgtt | ttatggccat | taaagctggc | tgatcgtcgc | caaacaccaa | atacataatg | 2820 |
| 2761 | ttctgtgcaa | aataccggta | atttcgaccg | actagcagcg | gtttgtggtt | tatgtattac | 2820 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2821 | aatatgtaca | cattcgagaa | agaagcgatc | aaagaagcgt | cttcgggcgg | agtaggagaa | 2880 |
| 2821 | ttatacatgt | gtaagctctt | tcttcgctag | tttcttcgca | gaagcccgcc | tcatcctctt | 2880 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2881 | tgcggaggag | aaggagaacg | agctgatcta | gtatctctcc | acaatccaat | gccaactgac | 2940 |
| 2881 | acgcctcctc | ttcctcttgc | tcgactagat | catagagagg | tgttaggtta | cggttgactg | 2940 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 2941 | caactggcca | tattcggagc | aatttgaagc | caatttccat | cgcctggcga | tcgctccatt | 3000 |
| 2941 | gttgaccggt | ataagcctcg | ttaaacttcg | gttaaaggta | gcggaccgct | agcgaggtaa | 3000 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | SmaI(3027) | .......... | .......... | .......... |
| 3001 | cttggctata | tgtttttcac | cgttcccggg | gccattttca | aagactcgtc | ggtaagataa | 3060 |
| 3001 | gaaccgatat | acaaaaagtg | gcaagggccc | cggtaaaagt | ttctgagcag | ccattctatt | 3060 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | NruI(3114) |
| 3061 | gattgtgtca | ctcgctgtct | ctcttcattt | gtcgaagaat | gctgaggaat | ttcgcgatga | 3120 |
| 3061 | ctaacacagt | gagcgacaga | gagaagtaaa | cagcttctta | cgactcctta | aagcgctact | 3120 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3121 | cgtcggcgag | tattttgaag | aatgagaata | atttgtattt | atacgaaaat | cagttagtgg | 3180 |
| 3121 | gcagccgctc | ataaaacttc | ttactcttat | taaacataaa | tatgctttta | gtcaatcacc | 3180 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3181 | aattttctac | aaaaacatgt | tatctataga | taattttgtt | gcaaaatatg | ttgactatga | 3240 |
| 3181 | ttaaaagatg | tttttgtaca | atagatatct | attaaaacaa | cgttttatac | aactgatact | 3240 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3241 | caaagattgt | atgtatatac | ctttaatgta | ttctcatttt | cttatgtatt | tataatggca | 3300 |
| 3241 | gtttctaaca | tacatatatg | gaaattacat | aagagtaaaa | gaatacataa | atattaccgt | 3300 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3301 | atgatgatac | tgatgatatt | ttaagatgat | gccagaccac | aggctgattt | ctgcgtcttt | 3360 |
| 3301 | tactactatg | actactataa | aattctacta | cggtctggtg | tccgactaaa | gacgcagaaa | 3360 |
| .......... | .......... | .......... | ......... | Orf frame 2 | ......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3361 | tgccgaacgc | agtgcatgtg | cggttgttgt | tttttggaat | agtttcaatt | ttcggactgt | 3420 |
| 3361 | acggcttgcg | tcacgtacac | gccaacaaca | aaaaacctta | tcaaagttaa | aagcctgaca | 3420 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3421 | ccgctttgat | ttcagtttct | tggcttattc | aaaaagcaaa | gtaaagccaa | aaaagcgaga | 3480 |
| 3421 | ggcgaaacta | aagtcaaaga | accgaataag | tttttcgttt | catttcggtt | ttttcgctct | 3480 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3481 | tggcaatacc | aaatgcggca | aaacggtagt | ggaaggaaag | gggtgcgggg | cagcggaagg | 3540 |
| 3481 | accgttatgg | tttacgccgt | tttgccatca | ccttcctttc | cccacgcccc | gtcgccttcc | 3540 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3541 | aagggtgggg | cggggcgtgg | cggggtctgt | ggctgggcgc | gacgtcaccg | acgttggagc | 3600 |
| 3541 | ttcccacccc | gccccgcacc | gccccagaca | ccgacccgcg | ctgcagtggc | tgcaacctcg | 3600 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3601 | cactcctttg | accatgtgtg | cgtgtgtgta | ttattcgtgt | ctcgccactc | gccggttgtt | 3660 |
| 3601 | gtgaggaaac | tggtacacac | gcacacacat | aataagcaca | gagcggtgag | cggccaacaa | 3660 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3661 | tttttctttt | tatctcgctc | tctctagcgc | catctcgtac | gcatgctcaa | cgcaccgcat | 3720 |
| 3661 | aaaaagaaaa | atagagcgag | agagatcgcg | gtagagcatg | cgtacgagtt | gcgtggcgta | 3720 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3721 | gttgccgtgt | cctttatgcg | tcattttggc | tcgaaatagg | caattattta | aacaaagatt | 3780 |
| 3721 | caacggcaca | ggaaatacgc | agtaaaaccg | agctttatcc | gttaataaat | ttgtttctaa | 3780 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3781 | agtcaacgaa | aacgctaaaa | taaataagtc | tacaatatgg | ttacttattg | ccatgtgtgt | 3840 |
| 3781 | tcagttgctt | ttgcgatttt | atttattcag | atgttatacc | aatgaataac | ggtacacaca | 3840 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3841 | gcagccaacg | atagcaacaa | aagcaacaac | acagtggctt | tccctctttc | actttttgtt | 3900 |
| 3841 | cgtcggttgc | tatcgttgtt | ttcgttgttg | tgtcaccgaa | agggagaaag | tgaaaaacaa | 3900 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3901 | tgcaagcgcg | tgcgagcaag | acggcacgac | cggcaaacgc | aattacgctg | acaaagagca | 3960 |
| 3901 | acgttcgcgc | acgctcgttc | tgccgtgctg | gccgtttgcg | ttaatgcgac | tgtttctcgt | 3960 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 3961 | gacgaagttt | tggccgaaaa | acatcaaggc | gcctgatacg | aatgcatttg | caataacaat | 4020 |
| 3961 | ctgcttcaaa | accggctttt | tgtagttccg | cggactatgc | ttacgtaaac | gttattgtta | 4020 |
| .......... | ......... | Orf frame 2 | ......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4021 | tgcgatattt | aatattgttt | atgaagctgt | ttgacttcaa | aacacacaaa | aaaaaaaata | 4080 |
| 4021 | acgctataaa | ttataacaaa | tacttcgaca | aactgaagtt | ttgtgtgttt | ttttttttat | 4080 |
| ......... | Orf frame 2 | ......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4081 | aaacaaatta | tttgaaagag | aattaggaat | cggacagctt | atcgttacgg | gctaacagca | 4140 |
| 4081 | tttgtttaat | aaactttctc | ttaatcctta | gcctgtcgaa | tagcaatgcc | cgattgtcgt | 4140 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4141 | caccgagacg | aaatagctta | cctgacgtca | cagcctctgg | aagaactgcc | gccaagcaga | 4200 |
| 4141 | gtggctctgc | tttatcgaat | ggactgcagt | gtcggagacc | ttcttgacgg | cggttcgtct | 4200 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4201 | cgatgcagag | gacgacacat | agagtagcgg | agtaggccag | cgtagtacgc | atgtgcttgt | 4260 |
| 4201 | gctacgtctc | ctgctgtgta | tctcatcgcc | tcatccggtc | gcatcatgcg | tacacgaaca | 4260 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4261 | gtgtgaggcg | tctctctctt | cgtctcctgt | ttgcgcaaac | gcatagactg | cactgagaaa | 4320 |
| 4261 | cacactccgc | agagagagaa | gcagaggaca | aacgcgtttg | cgtatctgac | gtgactcttt | 4320 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4321 | atcgattacc | tattttttat | gaatgaatat | ttgcactatt | actattcaaa | actattaaga | 4380 |
| 4321 | tagctaatgg | ataaaaaata | cttacttata | aacgtgataa | tgataagttt | tgataattct | 4380 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | BclI(4434) |
| 4381 | tagcaatcac | attcaatagc | caaatactat | accacctgag | cgatgcaacg | aaatgatcaa | 4440 |
| 4381 | atcgttagtg | taagttatcg | gtttatgata | tggtggactc | gctacgttgc | tttactagtt | 4440 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4441 | tttgagcaaa | aatgctgcat | atttaggacg | gcatcattat | agaaatgctt | cttgctgtgt | 4500 |
| 4441 | aaactcgttt | ttacgacgta | taaatcctgc | cgtagtaata | tctttacgaa | gaacgacaca | 4500 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | ......... | AflII(4548) | ......... |
| 4501 | acttttctct | cgtctggcag | ctgtttcgcc | gttattgtta | aaaccggctt | aagttaggtg | 4560 |
| 4501 | tgaaaagaga | gcagaccgtc | gacaaagcgg | caataacaat | tttggccgaa | ttcaatccac | 4560 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4561 | tgttttctac | gactagctag | tgatgcccct | actagaagat | gtgtgttgca | caaatgtccc | 4620 |
| 4561 | acaaaagatg | ctgatcgatc | actacgggga | tgatcttcta | cacacaacgt | gtttacaggg | 4620 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4621 | tgaataacca | atttgaagtg | cagatagcag | taaacgtaag | ctaatatgaa | tattatttaa | 4680 |
| 4621 | acttattggt | taaacttcac | gtctatcgtc | atttgcattc | gattatactt | ataataaatt | 4680 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4681 | ctgtaatgtt | ttaatatcgc | tggacattac | taataaaccc | actataaaca | catgtacata | 4740 |
| 4681 | gacattacaa | aattatagcg | acctgtaatg | attatttggg | tgatatttgt | gtacatgtat | 4740 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4741 | tgtatgtttt | ggcatacaat | gagtagttgg | ggaaaaaatg | tgtaaaagca | ccgtgaccat | 4800 |
| 4741 | acatacaaaa | ccgtatgtta | ctcatcaacc | ccttttttac | acattttcgt | ggcactggta | 4800 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4801 | cacagcataa | agataaccag | ctgaagtatc | gaatatgagt | aacccccaaa | ttgaatcaca | 4860 |
| 4801 | gtgtcgtatt | tctattggtc | gacttcatag | cttatactca | ttgggggttt | aacttagtgt | 4860 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | NcoI(4879) | .......... | .......... | .......... | .......... |
| 4861 | tgccgcaact | gataggaccc | atggaagtac | actcttcatg | gcgatataca | agacacacac | 4920 |
| 4861 | acggcgttga | ctatcctggg | taccttcatg | tgagaagtac | cgctatatgt | tctgtgtgtg | 4920 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4921 | aagcacgaac | acccagttgc | ggaggaaatt | ctccgtaaat | gaaaacccaa | tcggcgaaca | 4980 |
| 4921 | ttcgtgcttg | tgggtcaacg | cctcctttaa | gaggcattta | cttttgggtt | agccgcttgt | 4980 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 4981 | attcataccc | atatatggta | aaagttttga | acgcgacttg | agagcggaga | gcattgcggc | 5040 |
| 4981 | taagtatggg | tatataccat | tttcaaaact | tgcgctgaac | tctcgcctct | cgtaacgccg | 5040 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5041 | tgataaggtt | ttagcgctaa | gcgggcttta | taaaacgggc | tgcgggacca | gttttcatat | 5100 |
| 5041 | actattccaa | aatcgcgatt | cgcccgaaat | attttgcccg | acgccctggt | caaaagtata | 5100 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5101 | cactaccgtt | tgagttcttg | tgctgtgtgg | atactcctcc | cgacacaaag | ccgctccatc | 5160 |
| 5101 | gtgatggcaa | actcaagaac | acgacacacc | tatgaggagg | gctgtgtttc | ggcgaggtag | 5160 |
| .......... | .......... | .......... | .......... | .......... | AC5_primer |
| .......... | ...... | BamHI(5190) | | EcoRV(5198),SpeI(5202) XbaI(5208) | |
| 5161 | agccagcagt | cgtctaatcc | agagaccccg | gatccgatat | cactagttct | agaggtaccg | 5220 |
| 5161 | tcggtcgtca | gcagattagg | tctctggggc | ctaggctata | gtgatcaaga | tctccatggc | 5220 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| SacI(5224),NotI(5227) | HpaI(5236) | | ........ | .......... | .......... |
| 5221 | agctcgcggc | cgcgttaacc | gatccgtcga | ccatgaagat | caagatcatt | gccccgccag | 5280 |
| 5221 | tcgagcgccg | gcgcaattgg | ctaggcagct | ggtacttcta | gttctagtaa | cggggcggtc | 5280 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5281 | agcgcaagta | ctctgtctgg | atcggtggct | ccatcctggc | ttcgctgtcc | accttccagc | 5340 |
| 5281 | tcgcgttcat | gagacagacc | tagccaccga | ggtaggaccg | aagcgacagg | tggaaggtcg | 5340 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5341 | agatgtggat | ctccaagcag | gagtacgacg | agtccggccc | ctccattgtg | caccgcaagt | 5400 |
| 5341 | tctacaccta | gaggttcgtc | ctcatgctgc | tcaggccggg | gaggtaacac | gtggcgttca | 5400 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5401 | gcttctaaga | aggatcgctt | gtctgggcaa | gaggatcagg | atcgggatgg | tcttgattct | 5460 |
| 5401 | cgaagattct | tcctagcgaa | cagacccgtt | ctcctagtcc | tagccctacc | agaactaaga | 5460 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5461 | gctggaggag | gaggaggaga | agtcgaggaa | gcagcagcga | aagtgcaagt | gcgagtggtg | 5520 |
| 5461 | cgacctcctc | ctcctcctct | tcagctcctt | cgtcgtcgct | ttcacgttca | cgctcaccac | 5520 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5521 | gaagtttgga | gtgcagcaca | acaaaatcaa | caacaacacc | aactacaaga | tgaaaagagc | 5580 |
| 5521 | cttcaaacct | cacgtcgtgt | tgttttagtt | gttgttgtgg | ttgatgttct | acttttctcg | 5580 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5581 | ggaaccacct | gcacaccatc | atcactatca | tcatcgtttt | gggcgcatgt | tgtgtggttc | 5640 |
| 5581 | ccttggtgga | cgtgtggtag | tagtgatagt | agtagcaaaa | cccgcgtaca | acacaccaag | 5640 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5641 | cagcgtatta | atataattaa | tttattccac | atgagatatg | atatgatata | ctatgtattt | 5700 |
| 5641 | gtcgcataat | tatattaatt | aaataaggtg | tactctatac | tatactatat | gatacataaa | 5700 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5701 | tttgtttttt | ttttatttgt | aaacctttaa | tataacaaga | actacaaaaa | agtgaaaatg | 5760 |
| 5701 | aaacaaaaaa | aaaataaaca | tttggaaatt | atattgttct | tgatgttttt | tcacttttac | 5760 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5761 | agcgaaaatg | catattctgc | cattccacac | acacaccaac | aacacccaac | acacgcacac | 5820 |
| 5761 | tcgcttttac | gtataagacg | gtaaggtgtg | tgtgtggttg | ttgtgggttg | tgtgcgtgtg | 5820 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5821 | ccacaagctt | acacacacac | acattcgcgg | catgacaagg | acatcaagat | aaagaagaac | 5880 |
| 5821 | ggtgttcgaa | tgtgtgtgtg | tgtaagcgcc | gtactgttcc | tgtagttcta | tttcttcttg | 5880 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5881 | ttaaagaaga | tatttcccaa | agcgcaaaaa | gaacacacac | acattgcaaa | acacaaacaa | 5940 |
| 5881 | aatttcttct | ataaagggtt | tcgcgttttt | cttgtgtgtg | tgtaacgttt | tgtgtttgtt | 5940 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 5941 | cacactagcg | ttttgtacaa | ttcgtcagca | accttatgta | ttatttttta | attatgatgt | 6000 |
| 5941 | gtgtgatcgc | aaaacatgtt | aagcagtcgt | tggaatacat | aataaaaaat | taatactaca | 6000 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 6001 | aattataaac | aaagtgaaac | aaaaatatga | aaacaaaaag | gaaaatcaaa | tctgtcttct | 6060 |
| 6001 | ttaatatttg | tttcactttg | tttttatact | tttgtttttc | cttttagttt | agacagaaga | 6060 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 6061 | ctttctcccg | ctctcctcgc | tctctgctgc | taacctcgcc | ctctcctctc | tcatcttttt | 6120 |
| 6061 | gaaagagggc | gagaggagcg | agagacgacg | attggagcgg | gagaggagag | agtagaaaaa | 6120 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 6121 | gtctgtctct | cttcacattt | ttgccggccg | gcaaaataat | aacccacaca | cactcacact | 6180 |
| 6121 | cagacagaga | gaagtgtaaa | aacggccggc | cgttttatta | ttgggtgtgt | gtgagtgtga | 6180 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 6181 | tggctgcagt | ttcgcgtgcg | atattcacac | acattcaagc | atacatacat | atgtattttt | 6240 |
| 6181 | accgacgtca | aagcgcacgc | tataagtgtg | tgtaagttcg | tatgtatgta | tacataaaaa | 6240 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 6241 | tttttatttg | tacacttttc | taattgcatg | cgtatcgatt | gataagttta | cgctgaaaat | 6300 |
| 6241 | aaaaataaac | atgtgaaaag | attaacgtac | gcatagctaa | ctattcaaat | gcgactttta | 6300 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 6301 | gttaattaaa | atgtgaaaat | gcaactgaaa | aactgatgaa | atgaaacaac | aacaagcgaa | 6360 |
| 6301 | caattaattt | tacactttta | cgttgacttt | ttgactactt | tactttgttg | ttgttcgctt | 6360 |
| .......... | .......... | .......... | .......... | .......... | .......... |
| .......... | .......... | .......... | .......... | .......... | .......... |
| 6361 | caagtcgacc | tgcaggcatg | caagctt... | .......... | .......... | .......... | 6387 |
| 6361 | gttcagctgg | acgtccgtac | gttcgaa... | .......... | .......... | .......... | 6387 |
| .......... | .......... | .......... | .......... | .......... | .......... |
References
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