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  • BVTech Plasmid

    This sequnce graph is created using BVTech Plasmid, which is DNA sequence analysis and plasmid drawing software for Windows PCs.You can use it to plan your DNA cloning, draw high quality plasmid maps, analyse your DNA sequencing data, align sequences, and much more.

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    Sequence of pTriEx-3

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    Sequence of pTriEx-3 : 5082 BP; 1334 A; 1144 C; 1130 G; 1474 T; 0 other;

    ............................................................
    1tcctgcatcttttaatcaaatcccaagatgtgtataaacgcgccggtatgtacaggaaga60
    1aggacgtagaaaattagtttagggttctacacatatttgcgcggccatacatgtccttct60
    .................................................. Ac_5_flank
    ............................................................
    61ggtttatactaaactgttacattgcaaacgtggtttcgtgtgccaagtgtgaaaaccgat120
    61ccaaatatgatttgacaatgtaacgtttgcaccaaagcacacggttcacacttttggcta120
    .................... Ac_5_flank..............................
    ............................................................
    121gtttaatcaaggctctgacgcatttctacaaccacgactccaagtgtgtgggtgaagtca180
    121caaattagttccgagactgcgtaaagatgttggtgctgaggttcacacacccacttcagt180
    .................... Ac_5_flank..............................
    ............................................................
    181tgcatcttttaatcaaatcccaagatgtgtataaaccaccaaactgccaaaaaatgaaaa240
    181acgtagaaaattagtttagggttctacacatatttggtggtttgacggttttttactttt240
    .................... Ac_5_flank..............................
    ............................................................
    241ctgtcgacaagctctgtccgtttgctggcaactgcaagggtctcaatcctatttgtaatt300
    241gacagctgttcgagacaggcaaacgaccgttgacgttcccagagttaggataaacattaa300
    .................... Ac_5_flank..............................
    ............................................................
    301attgaataataaaacaattataaatgtcaaatttgttttttattaacgatacaaaccaaa360
    301taacttattattttgttaatatttacagtttaaacaaaaaataattgctatgtttggttt360
    .................... Ac_5_flank.................... ORF1
    ............................................................
    361cgcaacaagaacatttgtagtattatctataattgaaaacgcgtagttataatcgctgag420
    361gcgttgttcttgtaaacatcataatagatattaacttttgcgcatcaatattagcgactc420
    ................. Ac_5_flank ORF1...........................
    ............................................................
    421gtaatatttaaaatcattttcaaatgattcacagttaatttgcgacaatataattttatt480
    421cattataaattttagtaaaagtttactaagtgtcaattaaacgctgttatattaaaataa480
    ................. Ac_5_flank ORF1...........................
    ............................................................
    481ttcacataaactagacgccttgtcgtcttcttcttcgtattccttctctttttcattttt540
    481aagtgtatttgatctgcggaacagcagaagaagaagcataaggaagagaaaaagtaaaaa540
    ................. Ac_5_flank ORF1...........................
    ............................................................
    541ctcttcataaaaattaacatagttattatcgtatccatatatgtatctatcgtatagagt600
    541gagaagtatttttaattgtatcaataatagcataggtatatacatagatagcatatctca600
    ................. Ac_5_flank ORF1...........................
    ............................................................
    601aaattttttgttgtcataaatatatatgtcttttttaatggggtgtatagtaccgctgcg660
    601tttaaaaaacaacagtatttatatatacagaaaaaattaccccacatatcatggcgacgc660
    ................. Ac_5_flank ORF1...........................
    ............................................................
    661catagtttttctgtaatttacaacagtgctattttctggtagttcttcggagtgtgttgc720
    661gtatcaaaaagacattaaatgttgtcacgataaaagaccatcaagaagcctcacacaacg720
    ................. Ac_5_flank ORF1...........................
    ............................................................
    721tttaattattaaatttatataatcaatgaatttgggatcgtcggttttgtacaatatgtt780
    721aaattaataatttaaatatattagttacttaaaccctagcagccaaaacatgttatacaa780
    ................. Ac_5_flank ORF1...........................
    ............................................................
    781gccggcatagtacgcagcttcttctagttcaattacaccattttttagcagcaccggatt840
    781cggccgtatcatgcgtcgaagaagatcaagttaatgtggtaaaaaatcgtcgtggcctaa840
    ................. Ac_5_flank ORF1...........................
    ............................................................
    841aacataactttccaaaatgttgtacgaaccgttaaacaaaaacagttcacctcccttttc900
    841ttgtattgaaaggttttacaacatgcttggcaatttgtttttgtcaagtggagggaaaag900
    ................. Ac_5_flank ORF1...........................
    ............................................................
    901tatactattgtctgcgagcagttgtttgttgttaaaaataacagccattgtaatgagacg960
    901atatgataacagacgctcgtcaacaaacaacaatttttattgtcggtaacattactctgc960
    ................. Ac_5_flank ORF1...........................
    ............................................................
    961cacaaactaatatcacaaactggaaatgtctatcaatatatagttgctgatggccggcct1020
    961gtgtttgattatagtgtttgacctttacagatagttatatatcaacgactaccggccgga1020
    .................... Ac_5_flank..............................
    ............................................................
    1021attaatagtaatcaattacggggtcattagttcatagcccatatatggagttccgcgtta1080
    1021taattatcattagttaatgccccagtaatcaagtatcgggtatatacctcaaggcgcaat1080
    ........................ CMV_immearly_promoter..............
    ............................................................
    1081cataacttacggtaaatggcccgcctggctgaccgcccaacgacccccgcccattgacgt1140
    1081gtattgaatgccatttaccgggcggaccgactggcgggttgctgggggcgggtaactgca1140
    ........ CMV_immearly_promoter CAG_enhancer..................
    ............................................................
    1141caataatgacgtatgttcccatagtaacgccaatagggactttccattgacgtcaatggg1200
    1141gttattactgcatacaagggtatcattgcggttatccctgaaaggtaactgcagttaccc1200
    ........ CMV_immearly_promoter CAG_enhancer..................
    ............................................................
    1201tggagtatttacggtaaactgcccacttggcagtacatcaagtgtatcatatgccaagtc1260
    1201acctcataaatgccatttgacgggtgaaccgtcatgtagttcacatagtatacggttcag1260
    ........ CMV_immearly_promoter CAG_enhancer..................
    ............................................................
    1261cgccccctattgacgtcaatgacggtaaatggcccgcctggcattatgcccagtacatga1320
    1261gcgggggataactgcagttactgccatttaccgggcggaccgtaatacgggtcatgtact1320
    ........ CMV_immearly_promoter CAG_enhancer..................
    ............................................................
    1321ccttacgggactttcctacttggcagtacatctacgtattagtcatcgctattaccatgc1380
    1321ggaatgccctgaaaggatgaaccgtcatgtagatgcataatcagtagcgataatggtacg1380
    ........ CMV_immearly_promoter CAG_enhancer..................
    ............................................................
    1381tgatgcggttttggcagtacaccaatgggcgtggatagcggtttgactcacggggatttc1440
    1381actacgccaaaaccgtcatgtggttacccgcacctatcgccaaactgagtgcccctaaag1440
    .............. CMV_immearly_promoter........................
    ............................................................
    1441caagtctccaccccattgacgtcaatgggagtttgttttggcaccaaaatcaacgggact1500
    1441gttcagaggtggggtaactgcagttaccctcaaacaaaaccgtggttttagttgccctga1500
    .............. CMV_immearly_promoter........................
    ............................................................
    1501ttccaaaatgtcgtaataaccccgccccgttgacgcaaatgggcggtaggcgtgtacggt1560
    1501aaggttttacagcattattggggcggggcaactgcgtttacccgccatccgcacatgcca1560
    ......... CMV_immearly_promoter CMV_promoter CMV_fwd_primer.
    ............................................................
    1561gggaggtctatataagcagacgtcgtttagtgaaccgtcagatcactagatgctttattg1620
    1561ccctccagatatattcgtctgcagcaaatcacttggcagtctagtgatctacgaaataac1620
    CMV_immearly_promoter CMV_promoter..........................
    ............................................................
    1621cggtagtttatcacagttaaattgctaacgccagtctcgaacttaacgtgcagaagttgg1680
    1621gccatcaaatagtgtcaatttaacgattgcggtcagagcttgaattgcacgtcttcaacc1680
    ............................................................
    ............................................................
    1681tcgtgaggcactgggcaggtaagtatcgggccctttgtgcggggggagcggctcggggct1740
    1681agcactccgtgacccgtccattcatagcccgggaaacacgcccccctcgccgagccccga1740
    ............................................................
    SacII(1746)................................................
    1741gtccgcggggggacggctgccttcgggggggacggggcagggcggggttcggcttctggc1800
    1741caggcgcccccctgccgacggaagccccccctgccccgtcccgccccaagccgaagaccg1800
    ............................................................
    .......... XbaI(1815)........................................
    1801gtgtgaccggcggctctagagcctctgctaaccatgttcatgccttcttctttttcctac1860
    1801cacactggccgccgagatctcggagacgattggtacaagtacggaagaagaaaaaggatg1860
    ............................................................
    ............................................................
    1861agctcctgggcaacgtgctggttattgtgctgtctcatcattttggcaaagaattggatc1920
    1861tcgaggacccgttgcacgaccaataacacgacagagtagtaaaaccgtttcttaacctag1920
    ........ pCAG_F_primer......................................
    ............................................................
    1921ggaccgaaattaatacgactcactataggggaattgtgagcggataacaattccccggag1980
    1921cctggctttaattatgctgagtgatatccccttaacactcgcctattgttaaggggcctc1980
    ......... T7_promoter................... lacO..........
    ............................................................
    1981ttaatccgggacctttaattcaacccaacacaatatattatagttaaataagaattatta2040
    1981aattaggccctggaaattaagttgggttgtgttatataatatcaatttattcttaataat2040
    ............................................................
    ............................................................
    2041tcaaatcatttgtatattaattaaaatactatactgtaaattacattttatttacaatca2100
    2041agtttagtaaacatataattaattttatgatatgacatttaatgtaaaataaatgttagt2100
    ............................................................
    NcoI EcoRV,SmaI SacI2133),BamHI(2137) EcoRI(2143)
    2101aaggagatataccatggcgatatcccgggagctcgtggatccgaattctcagatctcggc2160
    2101ttcctctatatggtaccgctatagggccctcgagcacctaggcttaagagtctagagccg2160
    ............................................................
    PstI AgeI,KpnI,BstBI,HindIII NotI,EagI PvuII2206)
    2161gcgcctgcaggtcgacggtaccggttcgaagcttgcggccgcacagctgtatacacgtgc2220
    2161cgcggacgtccagctgccatggccaagcttcgaacgccggcgtgtcgacatatgtgcacg2220
    ............................................................
    .............................. XhoI(2258)....................
    2221aagccagccagaactcgccccggaagaccccgaggatctcgagcaccaccatcaccatca2280
    2221ttcggtcggtcttgagcggggccttctggggctcctagagctcgtggtggtagtggtagt2280
    ............................................................
    ............................................................
    2281ccatcactaagtgattaacctcaggtgcaggctgcctatcagaaggtggtggctggtgtg2340
    2281ggtagtgattcactaattggagtccacgtccgacggatagtcttccaccaccgaccacac2340
    ............................................................
    MscI(2341).................... ClaI(2373)....................
    2341gccaatgccctggctcacaaataccactgagatcgatctttttccctctgccaaaaatta2400
    2341cggttacgggaccgagtgtttatggtgactctagctagaaaaagggagacggtttttaat2400
    ............................................................
    ............................................................
    2401tggggacatcatgaagccccttgagcatctgacttctggctaataaaggaaatttatttt2460
    2401acccctgtagtacttcggggaactcgtagactgaagaccgattatttcctttaaataaaa2460
    ............................................................
    ............................................................
    2461cattgcaatagtgtgttggaattttttgtgtctctcactcggaaggacatatgggagggc2520
    2461gtaacgttatcacacaaccttaaaaaacacagagagtgagccttcctgtataccctcccg2520
    ............................................................
    ............................................................
    2521aaatcatttaaaacatcagaatgagtatttggtttagagtttggcaacatatgcccatat2580
    2521tttagtaaattttgtagtcttactcataaaccaaatctcaaaccgttgtatacgggtata2580
    ............................................................
    ............................................................
    2581gtaactagcataaccccttggggcctctaaacgggtcttgaggggttttttgctgaaagc2640
    2581cattgatcgtattggggaaccccggagatttgcccagaactccccaaaaaacgactttcg2640
    .................. T7_terminator............................
    ............................................................
    2641atgcggaggaaattctccttgaagtttccctggtgttcaaagtaaaggagtttgcaccag2700
    2641tacgcctcctttaagaggaacttcaaagggaccacaagtttcatttcctcaaacgtggtc2700
    .... Baculovirs_rev_primer.... 3_AcPH....................
    ............................................................
    2701acgcacctctgttcactggtccggcgtattaaaacacgatacattgttattagtacattt2760
    2701tgcgtggagacaagtgaccaggccgcataattttgtgctatgtaacaataatcatgtaaa2760
    .......... 3_AcPH........................................
    ............................................................
    2761attaagcgctagattctgtgcgttgttgatttacagacaattgttgtacgtattttaata2820
    2761taattcgcgatctaagacacgcaacaactaaatgtctgttaacaacatgcataaaattat2820
    ............................. Orf frame 2...................
    ............................................................
    2821attcattaaatttataatctttagggtggtatgttagagcgaaaatcaaatgattttcag2880
    2821taagtaatttaaatattagaaatcccaccatacaatctcgcttttagtttactaaaagtc2880
    ................... Orf frame 2.............................
    ............................................................
    2881cgtctttatatctgaatttaaatattaaatcctcaatagatttgtaaaataggtttcgat2940
    2881gcagaaatatagacttaaatttataatttaggagttatctaaacattttatccaaagcta2940
    ................... Orf frame 2.............................
    ............................................................
    2941tagtttcaaacaagggttgtttttccgaaccgatggctggactatctaatggattttcgc3000
    2941atcaaagtttgttcccaacaaaaaggcttggctaccgacctgatagattacctaaaagcg3000
    ................... Orf frame 2.............................
    ............................................................
    3001tcaacgccacaaaacttgccaaatcttgtagcagcaatctagctttgtcgatattcgttt3060
    3001agttgcggtgttttgaacggtttagaacatcgtcgttagatcgaaacagctataagcaaa3060
    ................... Orf frame 2.............................
    ............................................................
    3061gtgttttgttttgtaataaaggttcgacgtcgttcaaaatattatgcgcttttgtatttc3120
    3061cacaaaacaaaacattatttccaagctgcagcaagttttataatacgcgaaaacataaag3120
    ................... Orf frame 2.............................
    ............................................................
    3121tttcatcactgtcgttagtgtacaattgactcgacgtaaacacgttaaatagagcttgga3180
    3121aaagtagtgacagcaatcacatgttaactgagctgcatttgtgcaatttatctcgaacct3180
    ................... Orf frame 2.............................
    ............................................................
    3181catatttaacatcgggcgtgttagctttattaggccgattatcgtcgtcgtcccaaccct3240
    3181gtataaattgtagcccgcacaatcgaaataatccggctaatagcagcagcagggttggga3240
    ................... Orf frame 2.............................
    ............................................................
    3241cgtcgttagaagttgcttccgaagacgattttgccatagccacacgacgcctattaattg3300
    3241gcagcaatcttcaacgaaggcttctgctaaaacggtatcggtgtgctgcggataattaac3300
    ................... Orf frame 2.............................
    ............................................................
    3301tgtcggctaacacgtccgcgatcaaatttgtagttgagctttttggaattgcgatcgcat3360
    3301acagccgattgtgcaggcgctagtttaaacatcaactcgaaaaaccttaacgctagcgta3360
    ................... Orf frame 2.............................
    ............................................................
    3361aacttcgtatagcatacattatacgaagttataagctcggaacgctgcgctcggtcgttc3420
    3361ttgaagcatatcgtatgtaatatgcttcaatattcgagccttgcgacgcgagccagcaag3420
    Orf frame 2 loxP......................................
    ............................................................
    3421ggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcag3480
    3421ccgacgccgctcgccatagtcgagtgagtttccgccattatgccaataggtgtcttagtc3480
    ............................................................
    ............................................................
    3481gggataacgcaggaaagaacatgtgagcaaaaggccagcaaaaggccaggaaccgtaaaa3540
    3481ccctattgcgtcctttcttgtacactcgttttccggtcgttttccggtccttggcatttt3540
    ............................................................
    ............................................................
    3541aggccgcgttgctggcgtttttccataggctccgccccctgacgagcatcacaaaaatcg3600
    3541tccggcgcaacgaccgcaaaaaggtatccgaggcgggggactgctcgtagtgtttttagc3600
    ............................ pBR322_origin..................
    ............................................................
    3601acgctcaagtcagaggtggcgaaacccgacaggactataaagataccaggcgtttccccc3660
    3601tgcgagttcagtctccaccgctttgggctgtcctgatatttctatggtccgcaaaggggg3660
    .................. pBR322_origin............................
    ............................................................
    3661tggaagctccctcgtgcgctctcctgttccgaccctgccgcttaccggatacctgtccgc3720
    3661accttcgagggagcacgcgagaggacaaggctgggacggcgaatggcctatggacaggcg3720
    .................. pBR322_origin............................
    ............................................................
    3721ctttctcccttcgggaagcgtggcgctttctcaatgctcacgctgtaggtatctcagttc3780
    3721gaaagagggaagcccttcgcaccgcgaaagagttacgagtgcgacatccatagagtcaag3780
    .................. pBR322_origin............................
    ............................................................
    3781ggtgtaggtcgttcgctccaagctgggctgtgtgcacgaaccccccgttcagcccgaccg3840
    3781ccacatccagcaagcgaggttcgacccgacacacgtgcttggggggcaagtcgggctggc3840
    .................. pBR322_origin............................
    ............................................................
    3841ctgcgccttatccggtaactatcgtcttgagtccaacccggtaagacacgacttatcgcc3900
    3841gacgcggaataggccattgatagcagaactcaggttgggccattctgtgctgaatagcgg3900
    .................. pBR322_origin............................
    ............................................................
    3901actggcagcagccactggtaacaggattagcagagcgaggtatgtaggcggtgctacaga3960
    3901tgaccgtcgtcggtgaccattgtcctaatcgtctcgctccatacatccgccacgatgtct3960
    .................. pBR322_origin............................
    ............................................................
    3961gttcttgaagtggtggcctaactacggctacactagaagaacagtatttggtatctgcgc4020
    3961caagaacttcaccaccggattgatgccgatgtgatcttcttgtcataaaccatagacgcg4020
    .................. pBR322_origin............................
    ............................................................
    4021tctgctgaagccagttaccttcggaaaaagagttggtagctcttgatccggcaaacaaac4080
    4021agacgacttcggtcaatggaagcctttttctcaaccatcgagaactaggccgtttgtttg4080
    .................. pBR322_origin............................
    ............................................................
    4081caccgctggtagcggtggtttttttgtttgcaagcagcagattacgcgcagaaaaaaagg4140
    4081gtggcgaccatcgccaccaaaaaaacaaacgttcgtcgtctaatgcgcgtctttttttcc4140
    .................. pBR322_origin............................
    ............................................................
    4141atctcaagaagatcctttgttaccaatgcttaatcagtgaggcacctatctcagcgatct4200
    4141tagagttcttctaggaaacaatggttacgaattagtcactccgtggatagagtcgctaga4200
    pBR322_origin............. ORF2 Ampicillin.................
    ............................................................
    4201gtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgatacggg4260
    4201cagataaagcaagtaggtatcaacggactgaggggcagcacatctattgatgctatgccc4260
    ................. ORF2 Ampicillin...........................
    ............................................................
    4261agggcttaccatctggccccagtgctgcaatgataccgcgagacccacgctcaccggctc4320
    4261tcccgaatggtagaccggggtcacgacgttactatggcgctctgggtgcgagtggccgag4320
    ................. ORF2 Ampicillin...........................
    ............................................................
    4321cagatttatcagcaataaaccagccagccggaagggccgagcgcagaagtggtcctgcaa4380
    4321gtctaaatagtcgttatttggtcggtcggccttcccggctcgcgtcttcaccaggacgtt4380
    ................. ORF2 Ampicillin...........................
    ............................................................
    4381ctttatccgcctccatccagtctattaattgttgccgggaagctagagtaagtagttcgc4440
    4381gaaataggcggaggtaggtcagataattaacaacggcccttcgatctcattcatcaagcg4440
    ................. ORF2 Ampicillin...........................
    ............................................................
    4441cagttaatagtttgcgcaacgttgttgccattgctacaggcatcgtggtgtcacgctcgt4500
    4441gtcaattatcaaacgcgttgcaacaacggtaacgatgtccgtagcaccacagtgcgagca4500
    ................. ORF2 Ampicillin...........................
    ............................................................
    4501cgtttggtatggcttcattcagctccggttcccaacgatcaaggcgagttacatgatccc4560
    4501gcaaaccataccgaagtaagtcgaggccaagggttgctagttccgctcaatgtactaggg4560
    ................. ORF2 Ampicillin...........................
    ............................................................
    4561ccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcgttgtcagaagtaagt4620
    4561ggtacaacacgttttttcgccaatcgaggaagccaggaggctagcaacagtcttcattca4620
    ................. ORF2 Ampicillin...........................
    ............................................................
    4621tggccgcagtgttatcactcatggttatggcagcactgcataattctcttactgtcatgc4680
    4621accggcgtcacaatagtgagtaccaataccgtcgtgacgtattaagagaatgacagtacg4680
    ................. ORF2 Ampicillin...........................
    ............................................................
    4681catccgtaagatgcttttctgtgactggtgagtactcaaccaagtcattctgagaatagt4740
    4681gtaggcattctacgaaaagacactgaccactcatgagttggttcagtaagactcttatca4740
    ................. ORF2 Ampicillin...........................
    ............................................................
    4741gtatgcggcgaccgagttgctcttgcccggcgtcaatacgggataataccgcgccacata4800
    4741catacgccgctggctcaacgagaacgggccgcagttatgccctattatggcgcggtgtat4800
    ................. ORF2 Ampicillin...........................
    ............................................................
    4801gcagaactttaaaagtgctcatcattggaaaacgttcttcggggcgaaaactctcaagga4860
    4801cgtcttgaaattttcacgagtagtaaccttttgcaagaagccccgcttttgagagttcct4860
    ................. ORF2 Ampicillin...........................
    ............................................................
    4861tcttaccgctgttgagatccagttcgatgtaacccactcgtgcacccaactgatcttcag4920
    4861agaatggcgacaactctaggtcaagctacattgggtgagcacgtgggttgactagaagtc4920
    ................. ORF2 Ampicillin...........................
    ............................................................
    4921catcttttactttcaccagcgtttctgggtgagcaaaaacaggaaggcaaaatgccgcaa4980
    4921gtagaaaatgaaagtggtcgcaaagacccactcgtttttgtccttccgttttacggcgtt4980
    ................. ORF2 Ampicillin...........................
    ............................................................
    4981aaaagggaataagggcgacacggaaatgttgaatactcatactcttcctttttcaatatt5040
    4981ttttcccttattcccgctgtgcctttacaacttatgagtatgagaaggaaaaagttataa5040
    ....... ORF2 Ampicillin.....................................
    ............................................................
    5041attgaagcatttatcagggttattgtctcatgtccgcgcgtt..................5082
    5041taacttcgtaaatagtcccaataacagagtacaggcgcgcaa..................5082
    ............................................................

    References



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