Sequence of phRG-TK

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Sequence of phRG-TK

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Sequence of phRG-TK : 4843 BP; 1144 A; 1257 C; 1275 G; 1167 T; 0 other;

KpnI(5) SacI(11) NheI(21) XhoI(32),BglII(36) .. ..........

1 ggtaccgagc tcttacgcgt gctagcccgg gctcgagatc taaatgagtc ttcggacctc 60

1 ccatggctcg agaatgcgca cgatcgggcc cgagctctag atttactcag aagcctggag 60

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

61 gcgggggccg cttaagcggt ggttagggtt tgtctgacgc ggggggaggg ggaaggaacg 120

61 cgcccccggc gaattcgcca ccaatcccaa acagactgcg cccccctccc ccttccttgc 120

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... MscI(163) ..........

121 aaacactctc attcggaggc ggctcggggt ttggtcttgg tggccacggg cacgcagaag 180

121 tttgtgagag taagcctccg ccgagcccca aaccagaacc accggtgccc gtgcgtcttc 180

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

181 agcgccgcga tcctcttaag cacccccccg ccctccgtgg aggcgggggt ttggtcggcg 240

181 tcgcggcgct aggagaattc gtgggggggc gggaggcacc tccgccccca aaccagccgc 240

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

241 ggtggtaact ggcgggccgc tgactcgggc gggtcgcgcg ccccagagtg tgaccttttc 300

241 ccaccattga ccgcccggcg actgagcccg cccagcgcgc ggggtctcac actggaaaag 300

.......... .......... .......... .......... .......... ..........

.......... .......... NarI(325) SacII(334) .......... ..........

301 ggtctgctcg cagacccccg ggcggcgccg ccgcggcggc gacgggctcg ctgggtccta 360

301 ccagacgagc gtctgggggc ccgccgcggc ggcgccgccg ctgcccgagc gacccaggat 360

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

361 ggctccatgg ggaccgtata cgtggacagg ctctggagca tccgcacgac tgcggtgata 420

361 ccgaggtacc cctggcatat gcacctgtcc gagacctcgt aggcgtgctg acgccactat 420

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

421 ttaccggaga ccttctgcgg gacgagccgg gtcacgcggc tgacgcggag cgtccgttgg 480

421 aatggcctct ggaagacgcc ctgctcggcc cagtgcgccg actgcgcctc gcaggcaacc 480

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

481 gcgacaaaca ccaggacggg gcacaggtac actatcttgt cacccggagg cgcgagggac 540

481 cgctgtttgt ggtcctgccc cgtgtccatg tgatagaaca gtgggcctcc gcgctccctg 540

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

541 tgcaggagct tcagggagtg gcgcagctgc ttcatccccg tggcccgttg ctcgcgtttg 600

541 acgtcctcga agtccctcac cgcgtcgacg aagtaggggc accgggcaac gagcgcaaac 600

.......... .......... .......... ....... TATA_pro TK_pro .......

.......... .......... .......... .......... .......... ..........

601 ctggcggtgt ccccggaaga aatatatttg catgtcttta gttctatgat gacacaaacc 660

601 gaccgccaca ggggccttct ttatataaac gtacagaaat caagatacta ctgtgtttgg 660

.......... ....... TATA_pro TK_pro ....... .......... ..........

.......... .... EcoRI(684),BstBI(688) .... .......... ..........

661 ccgcccagcg tcttgtcatt ggcgaattcg aacacgcaga tgcagtcggg gcggcgcggt 720

661 ggcgggtcgc agaacagtaa ccgcttaagc ttgtgcgtct acgtcagccc cgccgcgcca 720

.......... ....... TATA_pro TK_pro ....... .......... ..........

.......... .......... .......... .......... .......... ..........

721 cccaggtcca cttcgcatat taaggtgacg cgtgtggcct cgaacaccga gcgaccctgc 780

721 gggtccaggt gaagcgtata attccactgc gcacaccgga gcttgtggct cgctgggacg 780

.......... .......... TK_pro .......... .......... ..........

......... HindIII(795) ......... .......... .......... ..........

781 agcgacccgc ttaaaagctt ggcattccgg tactgttggt aaagccacca tggcttccaa 840

781 tcgctgggcg aattttcgaa ccgtaaggcc atgacaacca tttcggtggt accgaaggtt 840

TK_pro .......... .......... .......... .......... ORF 2

.......... .......... .......... .......... .......... ..........

841 ggtgtacgac cccgagcaac gcaaacgcat gatcactggg cctcagtggt gggctcgctg 900

841 ccacatgctg gggctcgttg cgtttgcgta ctagtgaccc ggagtcacca cccgagcgac 900

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

901 caagcaaatg aacgtgctgg actccttcat caactactat gattccgaga agcacgccga 960

901 gttcgtttac ttgcacgacc tgaggaagta gttgatgata ctaaggctct tcgtgcggct 960

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

961 gaacgccgtg atttttctgc atggtaacgc tgcctccagc tacctgtgga ggcacgtcgt 1020

961 cttgcggcac taaaaagacg taccattgcg acggaggtcg atggacacct ccgtgcagca 1020

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1021 gcctcacatc gagcccgtgg ctagatgcat catccctgat ctgatcggaa tgggtaagtc 1080

1021 cggagtgtag ctcgggcacc gatctacgta gtagggacta gactagcctt acccattcag 1080

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1081 cggcaagagc gggaatggct catatcgcct cctggatcac tacaagtacc tcaccgcttg 1140

1081 gccgttctcg cccttaccga gtatagcgga ggacctagtg atgttcatgg agtggcgaac 1140

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1141 gttcgagctg ctgaaccttc caaagaaaat catctttgtg ggccacgact ggggggcttg 1200

1141 caagctcgac gacttggaag gtttctttta gtagaaacac ccggtgctga ccccccgaac 1200

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1201 tctggccttt cactactcct acgagcacca agacaagatc aaggccatcg tccatgctga 1260

1201 agaccggaaa gtgatgagga tgctcgtggt tctgttctag ttccggtagc aggtacgact 1260

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... ......... EcoRV(1315)

1261 gagtgtcgtg gacgtgatcg agtcctggga cgagtggcct gacatcgagg aggatatcgc 1320

1261 ctcacagcac ctgcactagc tcaggaccct gctcaccgga ctgtagctcc tcctatagcg 1320

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1321 cctgatcaag agcgaagagg gcgagaaaat ggtgcttgag aataacttct tcgtcgagac 1380

1321 ggactagttc tcgcttctcc cgctctttta ccacgaactc ttattgaaga agcagctctg 1380

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1381 catgctccca agcaagatca tgcggaaact ggagcctgag gagttcgctg cctacctgga 1440

1381 gtacgagggt tcgttctagt acgcctttga cctcggactc ctcaagcgac ggatggacct 1440

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1441 gccattcaag gagaagggcg aggttagacg gcctaccctc tcctggcctc gcgagatccc 1500

1441 cggtaagttc ctcttcccgc tccaatctgc cggatgggag aggaccggag cgctctaggg 1500

.......... .......... ORF 2 .......... .......... ..........

.......... ......... AatII(1527) ......... .......... ..........

1501 tctcgttaag ggaggcaagc ccgacgtcgt ccagattgtc cgcaactaca acgcctacct 1560

1501 agagcaattc cctccgttcg ggctgcagca ggtctaacag gcgttgatgt tgcggatgga 1560

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1561 tcgggccagc gacgatctgc ctaagatgtt catcgagtcc gaccctgggt tcttttccaa 1620

1561 agcccggtcg ctgctagacg gattctacaa gtagctcagg ctgggaccca agaaaaggtt 1620

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1621 cgctattgtc gagggagcta agaagttccc taacaccgag ttcgtgaagg tgaagggcct 1680

1621 gcgataacag ctccctcgat tcttcaaggg attgtggctc aagcacttcc acttcccgga 1680

.......... .......... ORF 2 .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1681 ccacttcagc caggaggacg ctccagatga aatgggtaag tacatcaaga gcttcgtgga 1740

1681 ggtgaagtcg gtcctcctgc gaggtctact ttacccattc atgtagttct cgaagcacct 1740

.......... .......... ORF 2 .......... .......... ..........

.......... .......... XbaI(1767) .......... .......... ..........

1741 gcgcgtgctg aagaacgagc agtaattcta gagtcggggc ggccggccgc ttcgagcaga 1800

1741 cgcgcacgac ttcttgctcg tcattaagat ctcagccccg ccggccggcg aagctcgtct 1800

.......... ORF 2 .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

1801 catgataaga tacattgatg agtttggaca aaccacaact agaatgcagt gaaaaaaatg 1860

1801 gtactattct atgtaactac tcaaacctgt ttggtgttga tcttacgtca ctttttttac 1860

.......... ........ EBV_rev_pri SV40_PA_term ........ ..........

.......... .......... .......... .......... .......... ..........

1861 ctttatttgt gaaatttgtg atgctattgc tttatttgta accattataa gctgcaataa 1920

1861 gaaataaaca ctttaaacac tacgataacg aaataaacat tggtaatatt cgacgttatt 1920

.......... ......... SV40_PA_term ......... .......... ..........

.......... .......... .......... .......... .......... ..........

1921 acaagttaac aacaacaatt gcattcattt tatgtttcag gttcaggggg aggtgtggga 1980

1921 tgttcaattg ttgttgttaa cgtaagtaaa atacaaagtc caagtccccc tccacaccct 1980

.......... .......... .......... .......... .......... ..........

.......... .......... .......... ......... BamHI(2029) SalI(2035)

1981 ggttttttaa agcaagtaaa acctctacaa atgtggtaaa atcgataagg atccgtcgac 2040

1981 ccaaaaaatt tcgttcattt tggagatgtt tacaccattt tagctattcc taggcagctg 2040

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

2041 cgatgccctt gagagccttc aacccagtca gctccttccg gtgggcgcgg ggcatgacta 2100

2041 gctacgggaa ctctcggaag ttgggtcagt cgaggaaggc cacccgcgcc ccgtactgat 2100

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

2101 tcgtcgccgc acttatgact gtcttcttta tcatgcaact cgtaggacag gtgccggcag 2160

2101 agcagcggcg tgaatactga cagaagaaat agtacgttga gcatcctgtc cacggccgtc 2160

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

2161 cgctcttccg cttcctcgct cactgactcg ctgcgctcgg tcgttcggct gcggcgagcg 2220

2161 gcgagaaggc gaaggagcga gtgactgagc gacgcgagcc agcaagccga cgccgctcgc 2220

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

2221 gtatcagctc actcaaaggc ggtaatacgg ttatccacag aatcagggga taacgcagga 2280

2221 catagtcgag tgagtttccg ccattatgcc aataggtgtc ttagtcccct attgcgtcct 2280

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

2281 aagaacatgt gagcaaaagg ccagcaaaag gccaggaacc gtaaaaaggc cgcgttgctg 2340

2281 ttcttgtaca ctcgttttcc ggtcgttttc cggtccttgg catttttccg gcgcaacgac 2340

.......... .......... .......... .......... ........ pBR322_origin

.......... .......... .......... .......... .......... ..........

2341 gcgtttttcc ataggctccg cccccctgac gagcatcaca aaaatcgacg ctcaagtcag 2400

2341 cgcaaaaagg tatccgaggc ggggggactg ctcgtagtgt ttttagctgc gagttcagtc 2400

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2401 aggtggcgaa acccgacagg actataaaga taccaggcgt ttccccctgg aagctccctc 2460

2401 tccaccgctt tgggctgtcc tgatatttct atggtccgca aagggggacc ttcgagggag 2460

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2461 gtgcgctctc ctgttccgac cctgccgctt accggatacc tgtccgcctt tctcccttcg 2520

2461 cacgcgagag gacaaggctg ggacggcgaa tggcctatgg acaggcggaa agagggaagc 2520

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2521 ggaagcgtgg cgctttctca tagctcacgc tgtaggtatc tcagttcggt gtaggtcgtt 2580

2521 ccttcgcacc gcgaaagagt atcgagtgcg acatccatag agtcaagcca catccagcaa 2580

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2581 cgctccaagc tgggctgtgt gcacgaaccc cccgttcagc ccgaccgctg cgccttatcc 2640

2581 gcgaggttcg acccgacaca cgtgcttggg gggcaagtcg ggctggcgac gcggaatagg 2640

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2641 ggtaactatc gtcttgagtc caacccggta agacacgact tatcgccact ggcagcagcc 2700

2641 ccattgatag cagaactcag gttgggccat tctgtgctga atagcggtga ccgtcgtcgg 2700

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2701 actggtaaca ggattagcag agcgaggtat gtaggcggtg ctacagagtt cttgaagtgg 2760

2701 tgaccattgt cctaatcgtc tcgctccata catccgccac gatgtctcaa gaacttcacc 2760

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2761 tggcctaact acggctacac tagaagaaca gtatttggta tctgcgctct gctgaagcca 2820

2761 accggattga tgccgatgtg atcttcttgt cataaaccat agacgcgaga cgacttcggt 2820

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2821 gttaccttcg gaaaaagagt tggtagctct tgatccggca aacaaaccac cgctggtagc 2880

2821 caatggaagc ctttttctca accatcgaga actaggccgt ttgtttggtg gcgaccatcg 2880

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2881 ggtggttttt ttgtttgcaa gcagcagatt acgcgcagaa aaaaaggatc tcaagaagat 2940

2881 ccaccaaaaa aacaaacgtt cgtcgtctaa tgcgcgtctt tttttcctag agttcttcta 2940

.......... ........ pBR322_origin ........ .......... ..........

.......... .......... .......... .......... .......... ..........

2941 cctttgatct tttctacggg gtctgacgct cagtggaacg aaaactcacg ttaagggatt 3000

2941 ggaaactaga aaagatgccc cagactgcga gtcaccttgc ttttgagtgc aattccctaa 3000

pBR322_origin ...... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

3001 ttggtcatga gattatcaaa aaggatcttc acctagatcc ttttaaatta aaaatgaagt 3060

3001 aaccagtact ctaatagttt ttcctagaag tggatctagg aaaatttaat ttttacttca 3060

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

3061 tttaaatcaa tctaaagtat atatgagtaa acttggtctg acagttacca atgcttaatc 3120

3061 aaatttagtt agatttcata tatactcatt tgaaccagac tgtcaatggt tacgaattag 3120

.......... .......... .......... .......... ....... ORF 3 Ampicillin

.......... .......... .......... .......... .......... ..........

3121 agtgaggcac ctatctcagc gatctgtcta tttcgttcat ccatagttgc ctgactcccc 3180

3121 tcactccgtg gatagagtcg ctagacagat aaagcaagta ggtatcaacg gactgagggg 3180

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3181 gtcgtgtaga taactacgat acgggagggc ttaccatctg gccccagtgc tgcaatgata 3240

3181 cagcacatct attgatgcta tgccctcccg aatggtagac cggggtcacg acgttactat 3240

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3241 ccgcgagacc cacgctcacc ggctccagat ttatcagcaa taaaccagcc agccggaagg 3300

3241 ggcgctctgg gtgcgagtgg ccgaggtcta aatagtcgtt atttggtcgg tcggccttcc 3300

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... AseI(3350) ..........

3301 gccgagcgca gaagtggtcc tgcaacttta tccgcctcca tccagtctat taattgttgc 3360

3301 cggctcgcgt cttcaccagg acgttgaaat aggcggaggt aggtcagata attaacaacg 3360

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3361 cgggaagcta gagtaagtag ttcgccagtt aatagtttgc gcaacgttgt tgccattgct 3420

3361 gcccttcgat ctcattcatc aagcggtcaa ttatcaaacg cgttgcaaca acggtaacga 3420

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3421 acaggcatcg tggtgtcacg ctcgtcgttt ggtatggctt cattcagctc cggttcccaa 3480

3421 tgtccgtagc accacagtgc gagcagcaaa ccataccgaa gtaagtcgag gccaagggtt 3480

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3481 cgatcaaggc gagttacatg atcccccatg ttgtgcaaaa aagcggttag ctccttcggt 3540

3481 gctagttccg ctcaatgtac tagggggtac aacacgtttt ttcgccaatc gaggaagcca 3540

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3541 cctccgatcg ttgtcagaag taagttggcc gcagtgttat cactcatggt tatggcagca 3600

3541 ggaggctagc aacagtcttc attcaaccgg cgtcacaata gtgagtacca ataccgtcgt 3600

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3601 ctgcataatt ctcttactgt catgccatcc gtaagatgct tttctgtgac tggtgagtac 3660

3601 gacgtattaa gagaatgaca gtacggtagg cattctacga aaagacactg accactcatg 3660

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3661 tcaaccaagt cattctgaga atagtgtatg cggcgaccga gttgctcttg cccggcgtca 3720

3661 agttggttca gtaagactct tatcacatac gccgctggct caacgagaac gggccgcagt 3720

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3721 atacgggata ataccgcgcc acatagcaga actttaaaag tgctcatcat tggaaaacgt 3780

3721 tatgccctat tatggcgcgg tgtatcgtct tgaaattttc acgagtagta accttttgca 3780

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3781 tcttcggggc gaaaactctc aaggatctta ccgctgttga gatccagttc gatgtaaccc 3840

3781 agaagccccg cttttgagag ttcctagaat ggcgacaact ctaggtcaag ctacattggg 3840

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3841 actcgtgcac ccaactgatc ttcagcatct tttactttca ccagcgtttc tgggtgagca 3900

3841 tgagcacgtg ggttgactag aagtcgtaga aaatgaaagt ggtcgcaaag acccactcgt 3900

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3901 aaaacaggaa ggcaaaatgc cgcaaaaaag ggaataaggg cgacacggaa atgttgaata 3960

3901 ttttgtcctt ccgttttacg gcgttttttc ccttattccc gctgtgcctt tacaacttat 3960

.......... ....... ORF 3 Ampicillin ....... .......... ..........

.......... .......... .......... .......... .......... ..........

3961 ctcatactct tcctttttca atattattga agcatttatc agggttattg tctcatgagc 4020

3961 gagtatgaga aggaaaaagt tataataact tcgtaaatag tcccaataac agagtactcg 4020

.......... .......... .......... .......... .......... AmpR_pro

.......... .......... .......... .......... .......... ..........

4021 ggatacatat ttgaatgtat ttagaaaaat aaacaaatag gggttccgcg cacatttccc 4080

4021 cctatgtata aacttacata aatcttttta tttgtttatc cccaaggcgc gtgtaaaggg 4080

AmpR_pro .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4081 cgaaaagtgc cacctgacgc gccctgtagc ggcgcattaa gcgcggcggg tgtggtggtt 4140

4081 gcttttcacg gtggactgcg cgggacatcg ccgcgtaatt cgcgccgccc acaccaccaa 4140

.......... .......... .......... .......... f1_origin ..........

.......... .......... .......... .......... .......... ..........

4141 acgcgcagcg tgaccgctac acttgccagc gccctagcgc ccgctccttt cgctttcttc 4200

4141 tgcgcgtcgc actggcgatg tgaacggtcg cgggatcgcg ggcgaggaaa gcgaaagaag 4200

.......... .......... f1_origin .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4201 ccttcctttc tcgccacgtt cgccggcttt ccccgtcaag ctctaaatcg ggggctccct 4260

4201 ggaaggaaag agcggtgcaa gcggccgaaa ggggcagttc gagatttagc ccccgaggga 4260

.......... .......... f1_origin .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4261 ttagggttcc gatttagtgc tttacggcac ctcgacccca aaaaacttga ttagggtgat 4320

4261 aatcccaagg ctaaatcacg aaatgccgtg gagctggggt tttttgaact aatcccacta 4320

.......... .......... f1_origin .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4321 ggttcacgta gtgggccatc gccctgatag acggtttttc gccctttgac gttggagtcc 4380

4321 ccaagtgcat cacccggtag cgggactatc tgccaaaaag cgggaaactg caacctcagg 4380

.......... .......... f1_origin .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4381 acgttcttta atagtggact cttgttccaa actggaacaa cactcaaccc tatctcggtc 4440

4381 tgcaagaaat tatcacctga gaacaaggtt tgaccttgtt gtgagttggg atagagccag 4440

.......... f1_origin .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4441 tattcttttg atttataagg gattttgccg atttcggcct attggttaaa aaatgagctg 4500

4441 ataagaaaac taaatattcc ctaaaacggc taaagccgga taaccaattt tttactcgac 4500

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4501 atttaacaaa aatttaacgc gaattttaac aaaatattaa cgcttacaat ttgccattcg 4560

4501 taaattgttt ttaaattgcg cttaaaattg ttttataatt gcgaatgtta aacggtaagc 4560

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4561 ccattcaggc tgcgcaactg ttgggaaggg cgatcggtgc gggcctcttc gctattacgc 4620

4561 ggtaagtccg acgcgttgac aacccttccc gctagccacg cccggagaag cgataatgcg 4620

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... NotI(4676)

4621 cagcccaagc taccatgata agtaagtaat attaaggtac gggaggtact tggagcggcc 4680

4621 gtcgggttcg atggtactat tcattcatta taattccatg ccctccatga acctcgccgg 4680

.......... .......... .......... .......... .......... ..........

.......... .......... .......... .......... .......... ..........

4681 gcaataaaat atctttattt tcattacatc tgtgtgttgg ttttttgtgt gaatcgatag 4740

4681 cgttatttta tagaaataaa agtaatgtag acacacaacc aaaaaacaca cttagctatc 4740

.......... ...... synth_PA_term TB up_PA_term ...... ..........

.......... .......... .......... .......... .......... ..........

4741 tactaacata cgctctccat caaaacaaaa cgaaacaaaa caaactagca aaataggctg 4800

4741 atgattgtat gcgagaggta gttttgtttt gctttgtttt gtttgatcgt tttatccgac 4800

.......... ........ TB up_PA_term ........ .......... RVpri3_pri

.......... .......... .......... .......... .......... ..........

4801 tccccagtgc aagtgcaggt gccagaacat ttctctatcg ata....... .......... 4843

4801 aggggtcacg ttcacgtcca cggtcttgta aagagatagc tat....... .......... 4843

........ TB up_PA_term ........ .......... .......... ..........